Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:70169710..70170219-chr3:70408001..70408782,3	MCF-7	breast:
2	chr3:70168850..70170141-chr3:70407736..70409029,7	MCF-7	breast:
3	chr3:70169236..70170162-chr3:70405810..70406347,2	MCF-7	breast:
4	chr3:70165884..70168076-chr3:70168571..70171047,2	MCF-7	breast:
5	chr3:70156989..70157667-chr3:70169680..70170186,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13318952	1.00[AMR][1000 genomes]
rs1491692	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1491693	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36118030	1.00[AMR][1000 genomes]
rs55780003	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60754263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6549273	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6549274	0.89[AFR][1000 genomes]
rs6773284	1.00[AMR][1000 genomes]
rs6781876	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6781981	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836100	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73838053	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73838064	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7641392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs966926	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9815363	1.00[AMR][1000 genomes]
rs9821387	1.00[AMR][1000 genomes]
rs9836245	1.00[AMR][1000 genomes]
rs9841257	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70166000-70182400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:70167800-70170200	Weak transcription	Aorta	Aorta
3	chr3:70169400-70169800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr3:70169400-70169800	Bivalent Enhancer	Fetal Thymus	thymus
5	chr3:70169400-70170000	Enhancers	Pancreas	Pancrea
6	chr3:70169600-70169800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:70169600-70170000	Enhancers	A549	lung
8	chr3:70169600-70182400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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