Variant report

Variant	rs9836245
Chromosome Location	chr3:69958440-69958441
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs12106897	1.00[EUR][1000 genomes]
rs12330475	1.00[EUR][1000 genomes]
rs12488275	1.00[EUR][1000 genomes]
rs13318952	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13319628	1.00[EUR][1000 genomes]
rs13321870	1.00[EUR][1000 genomes]
rs13325308	1.00[EUR][1000 genomes]
rs13325643	1.00[EUR][1000 genomes]
rs1491692	1.00[AMR][1000 genomes]
rs1491693	1.00[AMR][1000 genomes]
rs17006426	1.00[EUR][1000 genomes]
rs28545381	1.00[EUR][1000 genomes]
rs28548134	1.00[EUR][1000 genomes]
rs28583802	1.00[EUR][1000 genomes]
rs28811715	1.00[EUR][1000 genomes]
rs36118030	1.00[AMR][1000 genomes]
rs55906238	1.00[EUR][1000 genomes]
rs56086555	1.00[EUR][1000 genomes]
rs57240203	1.00[EUR][1000 genomes]
rs59761935	1.00[EUR][1000 genomes]
rs60327342	1.00[EUR][1000 genomes]
rs60618858	1.00[EUR][1000 genomes]
rs60754263	1.00[AMR][1000 genomes]
rs61545912	1.00[EUR][1000 genomes]
rs61678936	1.00[EUR][1000 genomes]
rs6770281	1.00[EUR][1000 genomes]
rs6773284	1.00[AMR][1000 genomes]
rs6780009	1.00[EUR][1000 genomes]
rs6781876	1.00[AMR][1000 genomes]
rs6781981	1.00[AMR][1000 genomes]
rs73836017	1.00[EUR][1000 genomes]
rs73836019	1.00[EUR][1000 genomes]
rs73836023	1.00[EUR][1000 genomes]
rs73836026	1.00[EUR][1000 genomes]
rs73836027	1.00[EUR][1000 genomes]
rs73836029	1.00[EUR][1000 genomes]
rs73836030	1.00[EUR][1000 genomes]
rs73836031	1.00[EUR][1000 genomes]
rs73836032	1.00[EUR][1000 genomes]
rs73836034	1.00[EUR][1000 genomes]
rs73836035	1.00[EUR][1000 genomes]
rs73836037	1.00[EUR][1000 genomes]
rs73836049	1.00[EUR][1000 genomes]
rs73836053	1.00[EUR][1000 genomes]
rs73836057	1.00[EUR][1000 genomes]
rs73836091	1.00[EUR][1000 genomes]
rs73836092	1.00[EUR][1000 genomes]
rs73838061	1.00[AMR][1000 genomes]
rs73838064	1.00[AMR][1000 genomes]
rs7620183	1.00[EUR][1000 genomes]
rs7621139	1.00[EUR][1000 genomes]
rs7626775	1.00[EUR][1000 genomes]
rs7631251	1.00[EUR][1000 genomes]
rs7631348	1.00[EUR][1000 genomes]
rs7633610	1.00[EUR][1000 genomes]
rs7633732	1.00[EUR][1000 genomes]
rs966926	1.00[AMR][1000 genomes]
rs9815363	1.00[AMR][1000 genomes]
rs9821387	1.00[AMR][1000 genomes]
rs9824748	1.00[EUR][1000 genomes]
rs9824825	1.00[EUR][1000 genomes]
rs9830619	1.00[EUR][1000 genomes]
rs9832459	1.00[EUR][1000 genomes]
rs9834247	1.00[EUR][1000 genomes]
rs9836115	1.00[EUR][1000 genomes]
rs9837652	1.00[EUR][1000 genomes]
rs9837698	1.00[EUR][1000 genomes]
rs9839441	1.00[EUR][1000 genomes]
rs9840427	1.00[EUR][1000 genomes]
rs9841257	1.00[AMR][1000 genomes]
rs9843425	1.00[EUR][1000 genomes]
rs9846982	1.00[EUR][1000 genomes]
rs9854199	1.00[EUR][1000 genomes]
rs9869929	1.00[EUR][1000 genomes]
rs9874322	1.00[EUR][1000 genomes]
rs9874957	1.00[EUR][1000 genomes]
rs9877286	1.00[EUR][1000 genomes]
rs9879292	1.00[EUR][1000 genomes]
rs9879921	1.00[EUR][1000 genomes]
rs9880541	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69948800-69964800	Weak transcription	Aorta	Aorta
2	chr3:69949800-69963800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:69951000-69959000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:69951200-69963200	Weak transcription	Left Ventricle	heart
5	chr3:69951200-69964800	Weak transcription	Gastric	stomach
6	chr3:69951200-69964800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:69951200-69974400	Weak transcription	Ovary	ovary
8	chr3:69953800-69965000	Weak transcription	Psoas Muscle	Psoas
9	chr3:69955000-69959000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:69956800-69964800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:69957000-69962400	Weak transcription	Fetal Heart	heart
12	chr3:69957000-69970600	Weak transcription	Brain Anterior Caudate	brain
13	chr3:69958000-69964800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:69958200-69958600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:69958400-69958600	Enhancers	Colon Smooth Muscle	Colon
16	chr3:69958400-69959800	Enhancers	Adipose Nuclei	Adipose
17	chr3:69958400-69964800	Weak transcription	A549	lung

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