Variant report

Variant	rs9837652
Chromosome Location	chr3:69989576-69989577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:69988625..69990593-chr3:70048684..70050598,2	K562	blood:
2	chr17:56735471..56737041-chr3:69989241..69991305,2	MCF-7	breast:
3	chr3:69988738..69991651-chr3:69993607..69996551,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000202077	Chromatin interaction
ENSG00000240405	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs12106897	1.00[EUR][1000 genomes]
rs12330475	1.00[EUR][1000 genomes]
rs12488275	1.00[EUR][1000 genomes]
rs13318952	1.00[EUR][1000 genomes]
rs13319628	1.00[EUR][1000 genomes]
rs13321870	1.00[EUR][1000 genomes]
rs13325308	1.00[EUR][1000 genomes]
rs13325643	1.00[EUR][1000 genomes]
rs17006426	1.00[EUR][1000 genomes]
rs28545381	1.00[EUR][1000 genomes]
rs28548134	1.00[EUR][1000 genomes]
rs28583802	1.00[EUR][1000 genomes]
rs28811715	1.00[EUR][1000 genomes]
rs55906238	1.00[EUR][1000 genomes]
rs56086555	1.00[EUR][1000 genomes]
rs57240203	1.00[EUR][1000 genomes]
rs59761935	1.00[EUR][1000 genomes]
rs60327342	1.00[EUR][1000 genomes]
rs60618858	1.00[EUR][1000 genomes]
rs61545912	1.00[EUR][1000 genomes]
rs61678936	1.00[EUR][1000 genomes]
rs6770281	1.00[EUR][1000 genomes]
rs6780009	1.00[EUR][1000 genomes]
rs73836017	1.00[EUR][1000 genomes]
rs73836019	1.00[EUR][1000 genomes]
rs73836023	1.00[EUR][1000 genomes]
rs73836026	1.00[EUR][1000 genomes]
rs73836027	1.00[EUR][1000 genomes]
rs73836029	1.00[EUR][1000 genomes]
rs73836030	1.00[EUR][1000 genomes]
rs73836031	1.00[EUR][1000 genomes]
rs73836032	1.00[EUR][1000 genomes]
rs73836034	1.00[EUR][1000 genomes]
rs73836035	1.00[EUR][1000 genomes]
rs73836037	1.00[EUR][1000 genomes]
rs73836049	1.00[EUR][1000 genomes]
rs73836053	1.00[EUR][1000 genomes]
rs73836057	1.00[EUR][1000 genomes]
rs73836091	1.00[EUR][1000 genomes]
rs73836092	1.00[EUR][1000 genomes]
rs7620183	1.00[EUR][1000 genomes]
rs7621139	1.00[EUR][1000 genomes]
rs7626775	1.00[EUR][1000 genomes]
rs7631251	1.00[EUR][1000 genomes]
rs7631348	1.00[EUR][1000 genomes]
rs7633610	1.00[EUR][1000 genomes]
rs7633732	1.00[EUR][1000 genomes]
rs9824748	1.00[EUR][1000 genomes]
rs9824825	1.00[EUR][1000 genomes]
rs9830619	1.00[EUR][1000 genomes]
rs9832459	1.00[EUR][1000 genomes]
rs9834247	1.00[EUR][1000 genomes]
rs9836115	1.00[EUR][1000 genomes]
rs9836245	1.00[EUR][1000 genomes]
rs9837698	1.00[EUR][1000 genomes]
rs9839441	1.00[EUR][1000 genomes]
rs9840427	1.00[EUR][1000 genomes]
rs9843425	1.00[EUR][1000 genomes]
rs9846982	1.00[EUR][1000 genomes]
rs9854199	1.00[EUR][1000 genomes]
rs9869929	1.00[EUR][1000 genomes]
rs9874322	1.00[EUR][1000 genomes]
rs9874957	1.00[EUR][1000 genomes]
rs9877286	1.00[EUR][1000 genomes]
rs9879292	1.00[EUR][1000 genomes]
rs9879921	1.00[EUR][1000 genomes]
rs9880541	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69964400-70008400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:69974800-69989600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:69975200-69989600	Weak transcription	Adipose Nuclei	Adipose
4	chr3:69975200-69997000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:69975200-70008400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:69975800-70008400	Weak transcription	Aorta	Aorta
7	chr3:69975800-70013800	Weak transcription	Psoas Muscle	Psoas
8	chr3:69978600-70014000	Weak transcription	Esophagus	oesophagus
9	chr3:69979800-70008400	Weak transcription	Right Ventricle	heart
10	chr3:69981800-69990600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr3:69981800-70008200	Weak transcription	Stomach Mucosa	stomach
12	chr3:69981800-70016800	Weak transcription	K562	blood
13	chr3:69983400-70008400	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:69984000-70008600	Weak transcription	Fetal Kidney	kidney
15	chr3:69985400-69990800	Weak transcription	NHLF	lung
16	chr3:69985400-70007000	Weak transcription	Fetal Stomach	stomach
17	chr3:69985600-69990600	Weak transcription	A549	lung
18	chr3:69985600-70008400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:69985800-69998200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:69986600-69993000	Weak transcription	Fetal Heart	heart
21	chr3:69987200-69993400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr3:69987200-70008400	Weak transcription	Lung	lung
23	chr3:69987400-69990600	Weak transcription	Brain Hippocampus Middle	brain
24	chr3:69987400-69990800	Weak transcription	Brain Substantia Nigra	brain
25	chr3:69987400-69993000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr3:69987600-69990000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:69987600-70008400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:69987800-70008400	Weak transcription	Gastric	stomach
29	chr3:69987800-70008400	Weak transcription	Pancreas	Pancrea
30	chr3:69988000-69989600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:69988200-69990800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr3:69988200-69992800	Weak transcription	Brain Anterior Caudate	brain
33	chr3:69988400-69989600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:69988400-69993000	Weak transcription	Brain Angular Gyrus	brain
35	chr3:69988400-70008800	Weak transcription	Fetal Lung	lung
36	chr3:69988800-69992000	Strong transcription	Colon Smooth Muscle	Colon
37	chr3:69989200-69990200	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr3:69989200-69993800	Strong transcription	Ovary	ovary
39	chr3:69989400-69990800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:69989400-69992600	Strong transcription	Left Ventricle	heart

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