Variant report

Variant	rs56086555
Chromosome Location	chr3:70091139-70091140
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs12106897	1.00[EUR][1000 genomes]
rs12330475	1.00[EUR][1000 genomes]
rs12488275	1.00[EUR][1000 genomes]
rs13318952	1.00[EUR][1000 genomes]
rs13319628	1.00[EUR][1000 genomes]
rs13321870	1.00[EUR][1000 genomes]
rs13325308	1.00[EUR][1000 genomes]
rs13325643	1.00[EUR][1000 genomes]
rs28545381	1.00[EUR][1000 genomes]
rs28548134	1.00[EUR][1000 genomes]
rs28583802	1.00[EUR][1000 genomes]
rs55906238	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57240203	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59761935	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60327342	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60618858	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61545912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61678936	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6770281	1.00[EUR][1000 genomes]
rs6797799	1.00[EUR][1000 genomes]
rs73836017	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836023	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836025	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836026	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836027	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836029	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836030	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836031	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836032	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836034	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836039	1.00[AMR][1000 genomes]
rs73836041	1.00[AMR][1000 genomes]
rs73836042	1.00[AMR][1000 genomes]
rs73836043	1.00[AMR][1000 genomes]
rs73836046	1.00[AMR][1000 genomes]
rs73836049	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836053	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836054	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836056	1.00[AMR][1000 genomes]
rs73836057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836058	1.00[AMR][1000 genomes]
rs73836059	1.00[AMR][1000 genomes]
rs73836089	1.00[AMR][1000 genomes]
rs73836091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836092	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836094	1.00[AMR][1000 genomes]
rs73836095	1.00[AMR][1000 genomes]
rs73838685	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7620183	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621139	1.00[EUR][1000 genomes]
rs7626775	1.00[EUR][1000 genomes]
rs7631251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7633610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9814696	1.00[AMR][1000 genomes]
rs9824748	1.00[EUR][1000 genomes]
rs9830619	1.00[EUR][1000 genomes]
rs9836115	1.00[EUR][1000 genomes]
rs9836196	1.00[EUR][1000 genomes]
rs9836245	1.00[EUR][1000 genomes]
rs9837652	1.00[EUR][1000 genomes]
rs9837698	1.00[EUR][1000 genomes]
rs9839441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9840427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9843425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9869929	1.00[EUR][1000 genomes]
rs9874322	1.00[EUR][1000 genomes]
rs9874957	1.00[EUR][1000 genomes]
rs9879292	1.00[EUR][1000 genomes]
rs9879921	1.00[EUR][1000 genomes]
rs9880541	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70063800-70098000	Weak transcription	Aorta	Aorta
2	chr3:70090000-70091200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:70090000-70093600	Weak transcription	Brain Anterior Caudate	brain
4	chr3:70090200-70091200	Weak transcription	Brain Substantia Nigra	brain
5	chr3:70090200-70091600	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:70090600-70091600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:70091000-70092800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:70091000-70093800	Enhancers	Cortex derived primary cultured neurospheres	brain

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