Variant report

Variant	rs13325308
Chromosome Location	chr3:70002965-70002966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs12106897	1.00[EUR][1000 genomes]
rs12330475	1.00[EUR][1000 genomes]
rs12488275	1.00[EUR][1000 genomes]
rs13318952	1.00[EUR][1000 genomes]
rs13319628	1.00[EUR][1000 genomes]
rs13321870	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13325643	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17006426	1.00[EUR][1000 genomes]
rs28545381	1.00[EUR][1000 genomes]
rs28548134	1.00[EUR][1000 genomes]
rs28583802	1.00[EUR][1000 genomes]
rs28811715	1.00[EUR][1000 genomes]
rs55906238	1.00[EUR][1000 genomes]
rs56086555	1.00[EUR][1000 genomes]
rs57240203	1.00[EUR][1000 genomes]
rs59761935	1.00[EUR][1000 genomes]
rs60327342	1.00[EUR][1000 genomes]
rs60618858	1.00[EUR][1000 genomes]
rs61545912	1.00[EUR][1000 genomes]
rs61678936	1.00[EUR][1000 genomes]
rs6770281	1.00[EUR][1000 genomes]
rs6780009	1.00[EUR][1000 genomes]
rs73836017	1.00[EUR][1000 genomes]
rs73836019	1.00[EUR][1000 genomes]
rs73836023	1.00[EUR][1000 genomes]
rs73836026	1.00[EUR][1000 genomes]
rs73836027	1.00[EUR][1000 genomes]
rs73836029	1.00[EUR][1000 genomes]
rs73836030	1.00[EUR][1000 genomes]
rs73836031	1.00[EUR][1000 genomes]
rs73836032	1.00[EUR][1000 genomes]
rs73836034	1.00[EUR][1000 genomes]
rs73836035	1.00[EUR][1000 genomes]
rs73836037	1.00[EUR][1000 genomes]
rs73836049	1.00[EUR][1000 genomes]
rs73836053	1.00[EUR][1000 genomes]
rs73836057	1.00[EUR][1000 genomes]
rs73836091	1.00[EUR][1000 genomes]
rs73836092	1.00[EUR][1000 genomes]
rs7620183	1.00[EUR][1000 genomes]
rs7621139	1.00[EUR][1000 genomes]
rs7626775	1.00[EUR][1000 genomes]
rs7631251	1.00[EUR][1000 genomes]
rs7633610	1.00[EUR][1000 genomes]
rs9823103	0.85[YRI][hapmap]
rs9824148	0.85[YRI][hapmap]
rs9824748	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs9824825	1.00[EUR][1000 genomes]
rs9830619	1.00[EUR][1000 genomes]
rs9832459	1.00[EUR][1000 genomes]
rs9834247	1.00[EUR][1000 genomes]
rs9836115	1.00[EUR][1000 genomes]
rs9836245	1.00[EUR][1000 genomes]
rs9837652	1.00[EUR][1000 genomes]
rs9837698	1.00[EUR][1000 genomes]
rs9839441	1.00[EUR][1000 genomes]
rs9840427	1.00[EUR][1000 genomes]
rs9843425	1.00[EUR][1000 genomes]
rs9845314	0.87[YRI][hapmap]
rs9846982	1.00[EUR][1000 genomes]
rs9854199	1.00[EUR][1000 genomes]
rs9869929	1.00[EUR][1000 genomes]
rs9874322	0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs9874957	1.00[EUR][1000 genomes]
rs9877286	1.00[EUR][1000 genomes]
rs9879292	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs9879921	1.00[EUR][1000 genomes]
rs9880541	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69964400-70008400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:69975200-70008400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:69975800-70008400	Weak transcription	Aorta	Aorta
4	chr3:69975800-70013800	Weak transcription	Psoas Muscle	Psoas
5	chr3:69978600-70014000	Weak transcription	Esophagus	oesophagus
6	chr3:69979800-70008400	Weak transcription	Right Ventricle	heart
7	chr3:69981800-70008200	Weak transcription	Stomach Mucosa	stomach
8	chr3:69981800-70016800	Weak transcription	K562	blood
9	chr3:69983400-70008400	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:69984000-70008600	Weak transcription	Fetal Kidney	kidney
11	chr3:69985400-70007000	Weak transcription	Fetal Stomach	stomach
12	chr3:69985600-70008400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:69987200-70008400	Weak transcription	Lung	lung
14	chr3:69987600-70008400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:69987800-70008400	Weak transcription	Gastric	stomach
16	chr3:69987800-70008400	Weak transcription	Pancreas	Pancrea
17	chr3:69988400-70008800	Weak transcription	Fetal Lung	lung
18	chr3:69990800-70015600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:69991200-70008600	Weak transcription	NHLF	lung
20	chr3:69993600-70015600	Weak transcription	Colonic Mucosa	Colon
21	chr3:69994400-70016200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:69996200-70008400	Weak transcription	HSMMtube	muscle
23	chr3:69998000-70007200	Weak transcription	Fetal Heart	heart
24	chr3:69998000-70008400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:69998000-70008600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:69998000-70008600	Weak transcription	Brain Angular Gyrus	brain
27	chr3:69998000-70008600	Weak transcription	Brain Anterior Caudate	brain
28	chr3:69998000-70008600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr3:69998000-70008600	Weak transcription	Brain Substantia Nigra	brain
30	chr3:69998000-70016000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr3:69998200-70017600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr3:69998400-70011200	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:69998400-70016000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr3:69998800-70003400	Weak transcription	Ovary	ovary
35	chr3:69998800-70014200	Weak transcription	A549	lung
36	chr3:69999000-70006200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr3:69999400-70003200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr3:69999400-70007400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:69999400-70008600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr3:70000600-70007400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:70000600-70008400	Weak transcription	Left Ventricle	heart
42	chr3:70001000-70005400	Weak transcription	Adipose Nuclei	Adipose
43	chr3:70001200-70003000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:70001200-70006800	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr3:70001200-70007600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr3:70001600-70017200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr3:70001800-70008400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr3:70002600-70008400	Weak transcription	Colon Smooth Muscle	Colon
49	chr3:70002600-70008400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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