Variant report

Variant	rs9824825
Chromosome Location	chr3:69786104-69786105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:69782003..69784200-chr3:69784758..69787503,2	K562	blood:
2	chr3:69778479..69780106-chr3:69784989..69787121,2	K562	blood:
3	chr3:69785154..69786856-chr3:69826242..69828364,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs12106897	1.00[EUR][1000 genomes]
rs12330475	1.00[EUR][1000 genomes]
rs13317316	1.00[EUR][1000 genomes]
rs13318952	1.00[EUR][1000 genomes]
rs13319628	1.00[EUR][1000 genomes]
rs13321870	1.00[EUR][1000 genomes]
rs13323954	1.00[EUR][1000 genomes]
rs13325308	1.00[EUR][1000 genomes]
rs13325643	1.00[EUR][1000 genomes]
rs17006276	1.00[EUR][1000 genomes]
rs17006426	1.00[EUR][1000 genomes]
rs28545381	1.00[EUR][1000 genomes]
rs28548134	1.00[EUR][1000 genomes]
rs28583802	1.00[EUR][1000 genomes]
rs28669920	1.00[EUR][1000 genomes]
rs28811715	1.00[EUR][1000 genomes]
rs60318629	1.00[EUR][1000 genomes]
rs6770281	1.00[EUR][1000 genomes]
rs6780009	1.00[EUR][1000 genomes]
rs72939327	1.00[EUR][1000 genomes]
rs72939335	1.00[EUR][1000 genomes]
rs72944904	1.00[EUR][1000 genomes]
rs72946160	1.00[EUR][1000 genomes]
rs7617831	1.00[EUR][1000 genomes]
rs7631348	1.00[EUR][1000 genomes]
rs7633732	1.00[EUR][1000 genomes]
rs7639402	1.00[EUR][1000 genomes]
rs7642966	0.91[AFR][1000 genomes]
rs9310167	1.00[EUR][1000 genomes]
rs9310170	1.00[EUR][1000 genomes]
rs9808923	1.00[EUR][1000 genomes]
rs9817476	1.00[EUR][1000 genomes]
rs9824748	1.00[EUR][1000 genomes]
rs9825685	1.00[EUR][1000 genomes]
rs9829925	1.00[EUR][1000 genomes]
rs9829928	1.00[EUR][1000 genomes]
rs9830619	1.00[EUR][1000 genomes]
rs9832459	1.00[EUR][1000 genomes]
rs9834247	1.00[EUR][1000 genomes]
rs9836115	1.00[EUR][1000 genomes]
rs9836245	1.00[EUR][1000 genomes]
rs9837652	1.00[EUR][1000 genomes]
rs9842372	1.00[EUR][1000 genomes]
rs9846358	1.00[EUR][1000 genomes]
rs9846982	1.00[EUR][1000 genomes]
rs9851338	1.00[EUR][1000 genomes]
rs9854199	1.00[EUR][1000 genomes]
rs9854296	1.00[EUR][1000 genomes]
rs9854835	1.00[EUR][1000 genomes]
rs9862006	1.00[EUR][1000 genomes]
rs9869929	1.00[EUR][1000 genomes]
rs9870280	1.00[EUR][1000 genomes]
rs9874322	1.00[EUR][1000 genomes]
rs9874957	1.00[EUR][1000 genomes]
rs9875933	1.00[EUR][1000 genomes]
rs9877286	1.00[EUR][1000 genomes]
rs9879292	1.00[EUR][1000 genomes]
rs9879921	1.00[EUR][1000 genomes]
rs9880541	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834723	chr3:69643641-69811601	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69780800-69786400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:69784000-69786200	Weak transcription	K562	blood
3	chr3:69784800-69787200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr3:69785400-69787200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:69785400-69787400	Weak transcription	Right Atrium	heart
6	chr3:69785400-69787400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:69786000-69786200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:69786000-69787200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:69786000-69787400	Enhancers	Fetal Heart	heart

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