Variant report

Variant	rs9832459
Chromosome Location	chr3:69850066-69850067
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs12106897	1.00[EUR][1000 genomes]
rs12330475	1.00[EUR][1000 genomes]
rs13314417	1.00[TSI][hapmap]
rs13316652	1.00[TSI][hapmap]
rs13317316	1.00[EUR][1000 genomes]
rs13318952	1.00[EUR][1000 genomes]
rs13319628	1.00[EUR][1000 genomes]
rs13321870	1.00[EUR][1000 genomes]
rs13323954	1.00[EUR][1000 genomes]
rs13325308	1.00[EUR][1000 genomes]
rs13325643	1.00[EUR][1000 genomes]
rs17006276	1.00[EUR][1000 genomes]
rs17006426	1.00[EUR][1000 genomes]
rs17006549	1.00[TSI][hapmap]
rs28545381	1.00[EUR][1000 genomes]
rs28548134	1.00[EUR][1000 genomes]
rs28583802	1.00[EUR][1000 genomes]
rs28669920	1.00[EUR][1000 genomes]
rs28811715	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41370746	1.00[TSI][hapmap]
rs41440046	1.00[TSI][hapmap]
rs6770281	1.00[EUR][1000 genomes]
rs6780009	1.00[EUR][1000 genomes]
rs72944904	1.00[EUR][1000 genomes]
rs72946160	1.00[EUR][1000 genomes]
rs7631348	1.00[EUR][1000 genomes]
rs7633732	1.00[EUR][1000 genomes]
rs9310167	1.00[EUR][1000 genomes]
rs9310170	1.00[EUR][1000 genomes]
rs9817476	1.00[EUR][1000 genomes]
rs9824148	1.00[TSI][hapmap]
rs9824748	1.00[EUR][1000 genomes]
rs9824825	1.00[EUR][1000 genomes]
rs9827219	1.00[TSI][hapmap]
rs9829925	1.00[EUR][1000 genomes]
rs9829928	1.00[EUR][1000 genomes]
rs9830619	1.00[EUR][1000 genomes]
rs9834247	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9836115	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9836245	1.00[EUR][1000 genomes]
rs9837652	1.00[EUR][1000 genomes]
rs9842372	1.00[EUR][1000 genomes]
rs9843115	1.00[TSI][hapmap]
rs9846358	1.00[EUR][1000 genomes]
rs9846982	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs9851338	1.00[EUR][1000 genomes]
rs9854199	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9854296	1.00[EUR][1000 genomes]
rs9862006	1.00[EUR][1000 genomes]
rs9864251	1.00[LWK][hapmap]
rs9869929	1.00[EUR][1000 genomes]
rs9870280	1.00[EUR][1000 genomes]
rs9874322	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9874957	1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs9875933	1.00[EUR][1000 genomes]
rs9877286	1.00[EUR][1000 genomes]
rs9879292	1.00[EUR][1000 genomes]
rs9879921	1.00[EUR][1000 genomes]
rs9880541	1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1009045	chr3:69821621-69875782	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69841200-69856200	Weak transcription	Ovary	ovary
2	chr3:69841200-69857600	Weak transcription	Right Atrium	heart
3	chr3:69841400-69853200	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:69841400-69855800	Weak transcription	HSMM	muscle
5	chr3:69841600-69853400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:69841800-69855400	Weak transcription	NHLF	lung
7	chr3:69842200-69853000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:69843000-69850600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:69843400-69859800	Weak transcription	Left Ventricle	heart
10	chr3:69843600-69850400	Weak transcription	Fetal Heart	heart
11	chr3:69844000-69856000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:69847400-69860600	Weak transcription	Aorta	Aorta
13	chr3:69848000-69857600	Weak transcription	Psoas Muscle	Psoas
14	chr3:69848800-69853000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr3:69848800-69853800	Weak transcription	K562	blood
16	chr3:69848800-69858600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:69849200-69852400	Weak transcription	HUVEC	blood vessel
18	chr3:69849600-69851400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:69849800-69856200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:69849800-69869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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