Variant report

Variant	rs9846982
Chromosome Location	chr3:69858081-69858082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69845234..69848226-chr3:69856309..69859149,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12106897	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12330475	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13317316	1.00[EUR][1000 genomes]
rs13318952	1.00[EUR][1000 genomes]
rs13319628	1.00[EUR][1000 genomes]
rs13321870	1.00[EUR][1000 genomes]
rs13323954	1.00[EUR][1000 genomes]
rs13325308	1.00[EUR][1000 genomes]
rs13325643	1.00[EUR][1000 genomes]
rs17006276	1.00[EUR][1000 genomes]
rs17006426	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs28545381	1.00[EUR][1000 genomes]
rs28548134	1.00[EUR][1000 genomes]
rs28583802	1.00[EUR][1000 genomes]
rs28669920	1.00[EUR][1000 genomes]
rs28811715	1.00[EUR][1000 genomes]
rs6770281	1.00[EUR][1000 genomes]
rs6780009	1.00[EUR][1000 genomes]
rs72946160	1.00[EUR][1000 genomes]
rs7631348	1.00[EUR][1000 genomes]
rs7633732	1.00[EUR][1000 genomes]
rs9310167	1.00[EUR][1000 genomes]
rs9310170	1.00[EUR][1000 genomes]
rs9824748	1.00[EUR][1000 genomes]
rs9824825	1.00[EUR][1000 genomes]
rs9829925	1.00[EUR][1000 genomes]
rs9829928	1.00[EUR][1000 genomes]
rs9830619	1.00[EUR][1000 genomes]
rs9832459	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs9834247	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9836115	1.00[EUR][1000 genomes]
rs9836245	1.00[EUR][1000 genomes]
rs9837652	1.00[EUR][1000 genomes]
rs9846358	1.00[EUR][1000 genomes]
rs9854199	1.00[EUR][1000 genomes]
rs9854296	1.00[EUR][1000 genomes]
rs9862006	1.00[EUR][1000 genomes]
rs9869929	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9870280	1.00[EUR][1000 genomes]
rs9874322	1.00[EUR][1000 genomes]
rs9874957	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9875933	1.00[EUR][1000 genomes]
rs9877286	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9879292	1.00[EUR][1000 genomes]
rs9879921	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9880541	1.00[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1009045	chr3:69821621-69875782	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv963517	chr3:69851683-69877360	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69843400-69859800	Weak transcription	Left Ventricle	heart
2	chr3:69847400-69860600	Weak transcription	Aorta	Aorta
3	chr3:69848800-69858600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:69849800-69869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:69853400-69860600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr3:69854200-69858800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:69855600-69858200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:69855600-69858200	Enhancers	Fetal Heart	heart
9	chr3:69856200-69858600	Enhancers	Ovary	ovary
10	chr3:69856600-69861000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:69856800-69859800	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:69856800-69860600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr3:69857000-69858400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:69857000-69860400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:69857000-69860600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:69857600-69858200	Enhancers	Psoas Muscle	Psoas
17	chr3:69857600-69858200	Enhancers	K562	blood
18	chr3:69857600-69858800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:69857600-69862600	Enhancers	Colon Smooth Muscle	Colon
20	chr3:69857800-69858200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:69857800-69858600	Enhancers	Adipose Nuclei	Adipose
22	chr3:69857800-69858800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr3:69857800-69859000	Enhancers	Fetal Lung	lung
24	chr3:69858000-69858200	Enhancers	NHLF	lung
25	chr3:69858000-69859800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:69858000-69860400	Weak transcription	Right Atrium	heart
27	chr3:69858000-69860400	Weak transcription	Right Ventricle	heart
28	chr3:69858000-69862800	Weak transcription	HUVEC	blood vessel

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