Variant report

Variant	rs28548134
Chromosome Location	chr3:69926082-69926083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs12106897	1.00[EUR][1000 genomes]
rs12330475	1.00[EUR][1000 genomes]
rs12488275	1.00[EUR][1000 genomes]
rs13318952	1.00[EUR][1000 genomes]
rs13319628	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13321870	1.00[EUR][1000 genomes]
rs13325308	1.00[EUR][1000 genomes]
rs13325643	1.00[EUR][1000 genomes]
rs17006426	1.00[EUR][1000 genomes]
rs28545381	1.00[EUR][1000 genomes]
rs28583802	1.00[EUR][1000 genomes]
rs28811715	1.00[EUR][1000 genomes]
rs55906238	1.00[EUR][1000 genomes]
rs56086555	1.00[EUR][1000 genomes]
rs57240203	1.00[EUR][1000 genomes]
rs59761935	1.00[EUR][1000 genomes]
rs60327342	1.00[EUR][1000 genomes]
rs60618858	1.00[EUR][1000 genomes]
rs61545912	1.00[EUR][1000 genomes]
rs61678936	1.00[EUR][1000 genomes]
rs6770281	1.00[EUR][1000 genomes]
rs6780009	1.00[EUR][1000 genomes]
rs73836017	1.00[EUR][1000 genomes]
rs73836019	1.00[EUR][1000 genomes]
rs73836023	1.00[EUR][1000 genomes]
rs73836026	1.00[EUR][1000 genomes]
rs73836027	1.00[EUR][1000 genomes]
rs73836029	1.00[EUR][1000 genomes]
rs73836030	1.00[EUR][1000 genomes]
rs73836031	1.00[EUR][1000 genomes]
rs73836032	1.00[EUR][1000 genomes]
rs73836034	1.00[EUR][1000 genomes]
rs73836035	1.00[EUR][1000 genomes]
rs73836037	1.00[EUR][1000 genomes]
rs73836049	1.00[EUR][1000 genomes]
rs73836053	1.00[EUR][1000 genomes]
rs73836057	1.00[EUR][1000 genomes]
rs73836091	1.00[EUR][1000 genomes]
rs73836092	1.00[EUR][1000 genomes]
rs7620183	1.00[EUR][1000 genomes]
rs7621139	1.00[EUR][1000 genomes]
rs7626775	1.00[EUR][1000 genomes]
rs7631251	1.00[EUR][1000 genomes]
rs7631348	1.00[EUR][1000 genomes]
rs7633610	1.00[EUR][1000 genomes]
rs7633732	1.00[EUR][1000 genomes]
rs9824148	0.96[AFR][1000 genomes]
rs9824748	1.00[EUR][1000 genomes]
rs9824825	1.00[EUR][1000 genomes]
rs9830619	1.00[EUR][1000 genomes]
rs9832459	1.00[EUR][1000 genomes]
rs9834247	1.00[EUR][1000 genomes]
rs9836115	1.00[EUR][1000 genomes]
rs9836245	1.00[EUR][1000 genomes]
rs9837652	1.00[EUR][1000 genomes]
rs9837698	1.00[EUR][1000 genomes]
rs9839441	1.00[EUR][1000 genomes]
rs9840427	1.00[EUR][1000 genomes]
rs9842586	0.87[AFR][1000 genomes]
rs9843425	1.00[EUR][1000 genomes]
rs9845314	0.87[AFR][1000 genomes]
rs9846982	1.00[EUR][1000 genomes]
rs9849776	0.93[AFR][1000 genomes]
rs9854199	1.00[EUR][1000 genomes]
rs9869929	1.00[EUR][1000 genomes]
rs9874322	1.00[EUR][1000 genomes]
rs9874957	1.00[EUR][1000 genomes]
rs9877286	1.00[EUR][1000 genomes]
rs9879292	1.00[EUR][1000 genomes]
rs9879921	1.00[EUR][1000 genomes]
rs9880541	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69915800-69928400	Weak transcription	Pancreas	Pancrea
2	chr3:69916400-69933400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:69916800-69931200	Weak transcription	Fetal Stomach	stomach
4	chr3:69917200-69951200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:69918600-69928200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:69920000-69932600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:69920400-69932800	Weak transcription	Adipose Nuclei	Adipose
8	chr3:69920800-69930200	Weak transcription	Fetal Kidney	kidney
9	chr3:69920800-69937600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:69920800-69950800	Weak transcription	Ovary	ovary
11	chr3:69921600-69926800	Weak transcription	Stomach Mucosa	stomach
12	chr3:69922200-69936400	Weak transcription	Colon Smooth Muscle	Colon
13	chr3:69922400-69926400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:69922400-69928400	Weak transcription	Aorta	Aorta
15	chr3:69922400-69939000	Weak transcription	NHLF	lung
16	chr3:69922600-69934200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:69923000-69933400	Weak transcription	Hela-S3	cervix
18	chr3:69923000-69935000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr3:69923000-69937800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:69923200-69926600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:69923400-69929200	Enhancers	Fetal Heart	heart
22	chr3:69924400-69927600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:69924400-69927600	Weak transcription	Psoas Muscle	Psoas
24	chr3:69924400-69928200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:69924600-69927600	Weak transcription	Gastric	stomach
26	chr3:69924600-69928200	Weak transcription	Left Ventricle	heart
27	chr3:69924800-69926200	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr3:69924800-69928200	Weak transcription	Right Ventricle	heart
29	chr3:69925200-69937000	Weak transcription	Brain Hippocampus Middle	brain
30	chr3:69925400-69928800	Enhancers	A549	lung

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