Variant report

Variant	rs9836115
Chromosome Location	chr3:69904286-69904287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69903186..69905172-chr3:69908164..69910462,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs12106897	1.00[EUR][1000 genomes]
rs12330475	1.00[EUR][1000 genomes]
rs12488275	1.00[EUR][1000 genomes]
rs13314417	1.00[TSI][hapmap]
rs13316652	1.00[TSI][hapmap]
rs13317316	1.00[EUR][1000 genomes]
rs13318952	1.00[EUR][1000 genomes]
rs13319628	1.00[EUR][1000 genomes]
rs13321870	1.00[EUR][1000 genomes]
rs13323954	1.00[EUR][1000 genomes]
rs13325308	1.00[EUR][1000 genomes]
rs13325643	1.00[EUR][1000 genomes]
rs17006426	1.00[EUR][1000 genomes]
rs17006549	1.00[TSI][hapmap]
rs17006615	1.00[MEX][hapmap]
rs28545381	1.00[EUR][1000 genomes]
rs28548134	1.00[EUR][1000 genomes]
rs28583802	1.00[EUR][1000 genomes]
rs28811715	1.00[EUR][1000 genomes]
rs41370746	1.00[TSI][hapmap]
rs41440046	1.00[TSI][hapmap]
rs55906238	1.00[EUR][1000 genomes]
rs56086555	1.00[EUR][1000 genomes]
rs57240203	1.00[EUR][1000 genomes]
rs59761935	1.00[EUR][1000 genomes]
rs60327342	1.00[EUR][1000 genomes]
rs60618858	1.00[EUR][1000 genomes]
rs61545912	1.00[EUR][1000 genomes]
rs61678936	1.00[EUR][1000 genomes]
rs6770281	1.00[EUR][1000 genomes]
rs6780009	1.00[EUR][1000 genomes]
rs724794	1.00[MEX][hapmap]
rs73836017	1.00[EUR][1000 genomes]
rs73836019	1.00[EUR][1000 genomes]
rs73836023	1.00[EUR][1000 genomes]
rs73836026	1.00[EUR][1000 genomes]
rs73836027	1.00[EUR][1000 genomes]
rs73836029	1.00[EUR][1000 genomes]
rs73836030	1.00[EUR][1000 genomes]
rs73836031	1.00[EUR][1000 genomes]
rs73836032	1.00[EUR][1000 genomes]
rs73836034	1.00[EUR][1000 genomes]
rs73836035	1.00[EUR][1000 genomes]
rs73836037	1.00[EUR][1000 genomes]
rs73836049	1.00[EUR][1000 genomes]
rs73836053	1.00[EUR][1000 genomes]
rs73836057	1.00[EUR][1000 genomes]
rs73836091	1.00[EUR][1000 genomes]
rs73836092	1.00[EUR][1000 genomes]
rs7620183	1.00[EUR][1000 genomes]
rs7621139	1.00[EUR][1000 genomes]
rs7626775	1.00[EUR][1000 genomes]
rs7631251	1.00[EUR][1000 genomes]
rs7631348	1.00[EUR][1000 genomes]
rs7633610	1.00[EUR][1000 genomes]
rs7633732	1.00[EUR][1000 genomes]
rs9824148	1.00[TSI][hapmap]
rs9824748	1.00[EUR][1000 genomes]
rs9824825	1.00[EUR][1000 genomes]
rs9827219	1.00[TSI][hapmap]
rs9830619	1.00[EUR][1000 genomes]
rs9832459	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9834247	1.00[EUR][1000 genomes]
rs9836245	1.00[EUR][1000 genomes]
rs9837652	1.00[EUR][1000 genomes]
rs9839441	1.00[EUR][1000 genomes]
rs9840417	1.00[MEX][hapmap]
rs9840427	1.00[EUR][1000 genomes]
rs9843115	1.00[TSI][hapmap]
rs9843425	1.00[EUR][1000 genomes]
rs9843611	1.00[MEX][hapmap]
rs9846982	1.00[EUR][1000 genomes]
rs9847658	1.00[MEX][hapmap]
rs9854199	1.00[EUR][1000 genomes]
rs9869929	1.00[EUR][1000 genomes]
rs9874322	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9874957	0.84[ASW][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9877286	1.00[EUR][1000 genomes]
rs9879292	1.00[EUR][1000 genomes]
rs9879921	1.00[EUR][1000 genomes]
rs9880541	0.84[ASW][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9882545	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69888800-69904400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:69889800-69904800	Weak transcription	Brain Angular Gyrus	brain
3	chr3:69891800-69906000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:69895000-69904800	Weak transcription	Brain Substantia Nigra	brain
5	chr3:69895200-69913600	Weak transcription	Aorta	Aorta
6	chr3:69898000-69914800	Weak transcription	Right Ventricle	heart
7	chr3:69898400-69912800	Enhancers	Fetal Heart	heart
8	chr3:69900000-69904400	Weak transcription	Adipose Nuclei	Adipose
9	chr3:69900200-69908600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:69900800-69904800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:69900800-69910200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:69903800-69905200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:69903800-69905200	Enhancers	Right Atrium	heart
14	chr3:69903800-69906600	Enhancers	Colon Smooth Muscle	Colon
15	chr3:69904000-69904400	Enhancers	Left Ventricle	heart
16	chr3:69904000-69904800	Enhancers	A549	lung
17	chr3:69904000-69905400	Enhancers	Ovary	ovary
18	chr3:69904000-69905600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr3:69904000-69906000	Enhancers	Brain Hippocampus Middle	brain
20	chr3:69904000-69906600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:69904000-69913000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:69904200-69904400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:69904200-69904400	Enhancers	Psoas Muscle	Psoas
24	chr3:69904200-69904600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr3:69904200-69904800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr3:69904200-69905200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr3:69904200-69906200	Enhancers	Brain Cingulate Gyrus	brain
28	chr3:69904200-69906400	Enhancers	Fetal Lung	lung
29	chr3:69904200-69908400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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