Variant report

Variant	rs9882545
Chromosome Location	chr3:69918080-69918081
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1316735	0.90[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs17006574	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17006578	1.00[TSI][hapmap]
rs17006615	1.00[MEX][hapmap]
rs724794	1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap]
rs9310177	1.00[YRI][hapmap]
rs9820221	0.88[YRI][hapmap]
rs9827888	1.00[YRI][hapmap]
rs9836115	1.00[MEX][hapmap]
rs9840417	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9843611	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9847658	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9866423	0.81[YRI][hapmap]
rs9882576	1.00[YRI][hapmap]
rs9917631	1.00[YRI][hapmap]
rs9917633	0.88[YRI][hapmap]
rs9917634	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69915400-69918400	Weak transcription	Psoas Muscle	Psoas
2	chr3:69915400-69920000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:69915800-69918400	Weak transcription	Gastric	stomach
4	chr3:69915800-69918400	Weak transcription	K562	blood
5	chr3:69915800-69928400	Weak transcription	Pancreas	Pancrea
6	chr3:69916000-69922000	Weak transcription	Aorta	Aorta
7	chr3:69916200-69924800	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:69916400-69918200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:69916400-69918200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:69916400-69918400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:69916400-69918800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:69916400-69918800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:69916400-69920000	Weak transcription	Right Atrium	heart
14	chr3:69916400-69920000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:69916400-69920400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr3:69916400-69920400	Weak transcription	Ovary	ovary
17	chr3:69916400-69933400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr3:69916800-69931200	Weak transcription	Fetal Stomach	stomach
19	chr3:69917000-69918400	Weak transcription	NHEK	skin
20	chr3:69917000-69922000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:69917200-69918200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:69917200-69919000	Enhancers	Stomach Mucosa	stomach
23	chr3:69917200-69951200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:69917400-69918400	Weak transcription	HSMM	muscle
25	chr3:69917400-69918600	Weak transcription	Hela-S3	cervix
26	chr3:69917400-69918800	Weak transcription	NH-A	brain
27	chr3:69917400-69919000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:69917400-69920000	Weak transcription	Adipose Nuclei	Adipose
29	chr3:69917400-69920400	Weak transcription	Fetal Kidney	kidney
30	chr3:69917600-69918200	Enhancers	A549	lung
31	chr3:69917600-69918400	Weak transcription	Right Ventricle	heart
32	chr3:69917600-69920000	Weak transcription	Colon Smooth Muscle	Colon
33	chr3:69917600-69920000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr3:69917600-69921800	Enhancers	Fetal Heart	heart
35	chr3:69917800-69918200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:69917800-69918200	Weak transcription	NHLF	lung
37	chr3:69917800-69920600	Enhancers	Left Ventricle	heart
38	chr3:69918000-69918400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:69918000-69919000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:69918000-69919400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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