Variant report

Variant	rs9820221
Chromosome Location	chr3:69972284-69972285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11128144	0.87[EUR][1000 genomes]
rs11128145	0.87[EUR][1000 genomes]
rs11128146	0.87[EUR][1000 genomes]
rs11128147	0.87[EUR][1000 genomes]
rs11128148	1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128149	0.87[EUR][1000 genomes]
rs11128150	0.87[EUR][1000 genomes]
rs11128151	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs11128154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12106831	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12106842	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12106907	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12106913	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12106915	0.87[EUR][1000 genomes]
rs12107208	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12107258	0.87[EUR][1000 genomes]
rs12107267	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12107268	0.87[EUR][1000 genomes]
rs12107403	0.87[EUR][1000 genomes]
rs12107405	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12107409	0.87[EUR][1000 genomes]
rs12107473	0.87[EUR][1000 genomes]
rs12107744	1.00[CHB][hapmap]
rs12108172	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12108174	0.87[EUR][1000 genomes]
rs1430600	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1532199	1.00[CHB][hapmap]
rs17006441	1.00[CHB][hapmap]
rs17006565	1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs17006574	0.89[EUR][1000 genomes]
rs17006578	1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs17006580	0.87[EUR][1000 genomes]
rs17006582	0.87[EUR][1000 genomes]
rs17006587	0.87[EUR][1000 genomes]
rs17006593	0.87[EUR][1000 genomes]
rs17006595	0.87[EUR][1000 genomes]
rs17006597	0.87[EUR][1000 genomes]
rs17006601	0.87[EUR][1000 genomes]
rs17006609	0.87[EUR][1000 genomes]
rs28480308	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6549252	1.00[CHB][hapmap]
rs724794	1.00[CHB][hapmap]
rs9310177	1.00[CHB][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9827888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9837137	0.89[EUR][1000 genomes]
rs9840417	1.00[CHB][hapmap];0.88[YRI][hapmap];0.89[EUR][1000 genomes]
rs9843596	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9843611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9847658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9866423	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9873727	0.83[ASN][1000 genomes]
rs9882545	0.88[YRI][hapmap]
rs9882576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9917631	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9917633	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs9917634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9917686	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs9917798	0.87[EUR][1000 genomes]
rs9941978	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69951200-69974400	Weak transcription	Ovary	ovary
2	chr3:69964400-70008400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:69965200-69972600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:69965200-69974800	Weak transcription	Psoas Muscle	Psoas
5	chr3:69965200-69978200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:69965200-69979200	Weak transcription	Gastric	stomach
7	chr3:69971000-69972400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:69971000-69974400	Weak transcription	Fetal Heart	heart
9	chr3:69971200-69974600	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:69971400-69974400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:69971400-69975600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:69971600-69985200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:69971800-69974600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:69972000-69974400	Weak transcription	Brain Angular Gyrus	brain
15	chr3:69972000-69975600	Weak transcription	Pancreas	Pancrea
16	chr3:69972200-69974800	Weak transcription	Brain Anterior Caudate	brain
17	chr3:69972200-69974800	Weak transcription	Brain Substantia Nigra	brain

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