Variant report

Variant	rs12108174
Chromosome Location	chr3:69978827-69978828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10510993	1.00[ASN][1000 genomes]
rs11128144	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128145	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128146	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128147	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128148	1.00[EUR][1000 genomes]
rs11128149	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128151	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128154	0.87[EUR][1000 genomes]
rs12106831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106907	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106913	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107258	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107267	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107268	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12107403	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107405	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107409	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107473	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107744	1.00[ASN][1000 genomes]
rs12108172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430600	1.00[EUR][1000 genomes]
rs17006565	1.00[ASN][1000 genomes]
rs17006578	1.00[ASN][1000 genomes]
rs17006580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006595	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006597	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006601	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28480308	0.87[EUR][1000 genomes]
rs61479859	1.00[ASN][1000 genomes]
rs724794	1.00[ASN][1000 genomes]
rs73838686	1.00[ASN][1000 genomes]
rs9310177	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820221	0.87[EUR][1000 genomes]
rs9827888	0.87[EUR][1000 genomes]
rs9840417	1.00[ASN][1000 genomes]
rs9843596	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843611	0.87[EUR][1000 genomes]
rs9847658	0.87[EUR][1000 genomes]
rs9917631	0.87[EUR][1000 genomes]
rs9917633	0.87[EUR][1000 genomes]
rs9917634	0.87[EUR][1000 genomes]
rs9917686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9917798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9941978	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69964400-70008400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:69965200-69979200	Weak transcription	Gastric	stomach
3	chr3:69971600-69985200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:69974800-69989600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:69975000-69987000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:69975000-69987200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:69975200-69981600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:69975200-69989600	Weak transcription	Adipose Nuclei	Adipose
9	chr3:69975200-69997000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:69975200-70008400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:69975800-69979400	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:69975800-69987000	Weak transcription	Pancreas	Pancrea
13	chr3:69975800-70008400	Weak transcription	Aorta	Aorta
14	chr3:69975800-70013800	Weak transcription	Psoas Muscle	Psoas
15	chr3:69976000-69979200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:69976000-69979600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:69976400-69980200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:69976600-69980000	Enhancers	Fetal Heart	heart
19	chr3:69977200-69979200	Weak transcription	Ovary	ovary
20	chr3:69977600-69980000	Enhancers	Left Ventricle	heart
21	chr3:69977600-69980800	Enhancers	Brain Hippocampus Middle	brain
22	chr3:69978000-69981000	Enhancers	Brain Substantia Nigra	brain
23	chr3:69978200-69980400	Enhancers	Brain Anterior Caudate	brain
24	chr3:69978200-69980400	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr3:69978400-69981600	Weak transcription	Stomach Mucosa	stomach
26	chr3:69978400-69987000	Weak transcription	Lung	lung
27	chr3:69978600-69979600	Weak transcription	Brain Angular Gyrus	brain
28	chr3:69978600-69979600	Weak transcription	Right Atrium	heart
29	chr3:69978600-69979800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr3:69978600-69980000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:69978600-70014000	Weak transcription	Esophagus	oesophagus
32	chr3:69978800-69979200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr3:69978800-69979200	Weak transcription	Right Ventricle	heart

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