Variant report

Variant	rs17006587
Chromosome Location	chr3:69942242-69942243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:69929798..69932356-chr3:69940146..69942671,2	MCF-7	breast:
2	chr3:69934018..69936742-chr3:69940708..69942627,2	MCF-7	breast:
3	chr3:69941464..69943725-chr3:69944327..69947017,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10510993	1.00[ASN][1000 genomes]
rs11128144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128148	1.00[EUR][1000 genomes]
rs11128149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128151	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128154	0.87[EUR][1000 genomes]
rs12106831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12107403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107744	1.00[ASN][1000 genomes]
rs12108172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430600	1.00[EUR][1000 genomes]
rs17006565	1.00[ASN][1000 genomes]
rs17006578	1.00[ASN][1000 genomes]
rs17006580	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006582	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006593	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28480308	0.87[EUR][1000 genomes]
rs61479859	1.00[ASN][1000 genomes]
rs724794	1.00[ASN][1000 genomes]
rs73838686	1.00[ASN][1000 genomes]
rs9310177	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820221	0.87[EUR][1000 genomes]
rs9827888	0.87[EUR][1000 genomes]
rs9840417	1.00[ASN][1000 genomes]
rs9843596	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843611	0.87[EUR][1000 genomes]
rs9847658	0.87[EUR][1000 genomes]
rs9917631	0.87[EUR][1000 genomes]
rs9917633	0.87[EUR][1000 genomes]
rs9917634	0.87[EUR][1000 genomes]
rs9917686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9917798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9941978	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69917200-69951200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:69920800-69950800	Weak transcription	Ovary	ovary
3	chr3:69928600-69950800	Weak transcription	Pancreas	Pancrea
4	chr3:69928600-69951000	Weak transcription	Lung	lung
5	chr3:69934600-69942600	Weak transcription	Adipose Nuclei	Adipose
6	chr3:69934600-69943600	Weak transcription	Left Ventricle	heart
7	chr3:69935400-69950800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:69938400-69945000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:69938600-69942400	Weak transcription	Brain Anterior Caudate	brain
10	chr3:69938600-69943400	Weak transcription	Brain Angular Gyrus	brain
11	chr3:69938600-69944400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:69938600-69948400	Weak transcription	Aorta	Aorta
13	chr3:69938600-69949400	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:69938600-69950800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr3:69939600-69950800	Weak transcription	Right Ventricle	heart
16	chr3:69939600-69952800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:69940200-69949200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:69940800-69954200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:69941400-69943200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr3:69941600-69942400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
21	chr3:69941600-69942600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:69941600-69942600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:69941600-69942800	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr3:69941600-69943200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr3:69941800-69942600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
26	chr3:69941800-69942800	Enhancers	Brain Hippocampus Middle	brain
27	chr3:69941800-69953000	Enhancers	Fetal Heart	heart
28	chr3:69942000-69942400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:69942000-69942600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
30	chr3:69942000-69942600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr3:69942000-69942600	Enhancers	Stomach Mucosa	stomach
32	chr3:69942000-69942800	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr3:69942000-69942800	Enhancers	Gastric	stomach
34	chr3:69942000-69943000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
35	chr3:69942000-69946000	Weak transcription	Right Atrium	heart
36	chr3:69942200-69942800	Enhancers	H9 Cell Line	embryonic stem cell
37	chr3:69942200-69943000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr3:69942200-69943200	Enhancers	Brain Substantia Nigra	brain
39	chr3:69942200-69943200	Weak transcription	A549	lung

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