Variant report

Variant	rs12106915
Chromosome Location	chr3:69956058-69956059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69937914..69940791-chr3:69955380..69957093,2	MCF-7	breast:
2	chr3:69944020..69945856-chr3:69956045..69957566,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10510993	1.00[ASN][1000 genomes]
rs11128144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128148	1.00[EUR][1000 genomes]
rs11128149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128151	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128154	0.87[EUR][1000 genomes]
rs12106831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12107403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107744	1.00[ASN][1000 genomes]
rs12108172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430600	1.00[EUR][1000 genomes]
rs17006565	1.00[ASN][1000 genomes]
rs17006578	1.00[ASN][1000 genomes]
rs17006580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28480308	0.87[EUR][1000 genomes]
rs61479859	1.00[ASN][1000 genomes]
rs724794	1.00[ASN][1000 genomes]
rs73838686	1.00[ASN][1000 genomes]
rs9310177	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820221	0.87[EUR][1000 genomes]
rs9827888	0.87[EUR][1000 genomes]
rs9840417	1.00[ASN][1000 genomes]
rs9843596	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843611	0.87[EUR][1000 genomes]
rs9847658	0.87[EUR][1000 genomes]
rs9917631	0.87[EUR][1000 genomes]
rs9917633	0.87[EUR][1000 genomes]
rs9917634	0.87[EUR][1000 genomes]
rs9917686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9917798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9941978	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69948800-69964800	Weak transcription	Aorta	Aorta
2	chr3:69949000-69958000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:69949800-69963800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:69951000-69959000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:69951200-69956800	Weak transcription	Right Atrium	heart
6	chr3:69951200-69963200	Weak transcription	Left Ventricle	heart
7	chr3:69951200-69964800	Weak transcription	Gastric	stomach
8	chr3:69951200-69964800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:69951200-69974400	Weak transcription	Ovary	ovary
10	chr3:69951400-69956600	Weak transcription	Adipose Nuclei	Adipose
11	chr3:69952000-69956600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:69953800-69965000	Weak transcription	Psoas Muscle	Psoas
13	chr3:69954200-69957000	Enhancers	Fetal Heart	heart
14	chr3:69955000-69959000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:69955400-69956800	Flanking Active TSS	A549	lung
16	chr3:69955800-69957000	Enhancers	Brain Hippocampus Middle	brain
17	chr3:69955800-69957000	Enhancers	Brain Substantia Nigra	brain
18	chr3:69955800-69957000	Enhancers	Colon Smooth Muscle	Colon
19	chr3:69956000-69956400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr3:69956000-69956800	Enhancers	Brain Angular Gyrus	brain
21	chr3:69956000-69957000	Enhancers	Brain Cingulate Gyrus	brain
22	chr3:69956000-69957000	Enhancers	Rectal Smooth Muscle	rectum

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