Variant report

Variant	rs9843596
Chromosome Location	chr3:69960779-69960780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10510993	1.00[ASN][1000 genomes]
rs11128144	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128145	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128146	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128147	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128148	0.87[EUR][1000 genomes]
rs11128149	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128150	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128151	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128154	1.00[EUR][1000 genomes]
rs12106831	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106842	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106907	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106913	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106915	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107208	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107258	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107267	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107268	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12107403	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107405	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107409	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107473	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107744	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12108172	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108174	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430600	0.87[EUR][1000 genomes]
rs1532199	1.00[CHB][hapmap]
rs17006441	1.00[CHB][hapmap]
rs17006565	1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006574	0.89[EUR][1000 genomes]
rs17006578	1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006580	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006582	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006587	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006593	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006595	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006597	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006601	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006609	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28480308	1.00[EUR][1000 genomes]
rs61479859	1.00[ASN][1000 genomes]
rs6549252	1.00[CHB][hapmap]
rs724794	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73838686	1.00[ASN][1000 genomes]
rs9310177	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820221	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9823103	0.85[YRI][hapmap]
rs9824148	0.85[YRI][hapmap]
rs9824748	0.87[YRI][hapmap]
rs9827888	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9837137	0.89[EUR][1000 genomes]
rs9840417	1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843611	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9845314	0.87[YRI][hapmap]
rs9847658	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9866423	1.00[CHB][hapmap]
rs9874322	0.85[YRI][hapmap]
rs9879292	0.87[YRI][hapmap]
rs9882576	1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs9917631	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9917633	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9917634	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9917686	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9917798	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9941978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69948800-69964800	Weak transcription	Aorta	Aorta
2	chr3:69949800-69963800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:69951200-69963200	Weak transcription	Left Ventricle	heart
4	chr3:69951200-69964800	Weak transcription	Gastric	stomach
5	chr3:69951200-69964800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:69951200-69974400	Weak transcription	Ovary	ovary
7	chr3:69953800-69965000	Weak transcription	Psoas Muscle	Psoas
8	chr3:69956800-69964800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:69957000-69962400	Weak transcription	Fetal Heart	heart
10	chr3:69957000-69970600	Weak transcription	Brain Anterior Caudate	brain
11	chr3:69958000-69964800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:69958400-69964800	Weak transcription	A549	lung
13	chr3:69959800-69964800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:69960600-69964800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:69960600-69964800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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