Variant report

Variant	rs9310177
Chromosome Location	chr3:69947801-69947802
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69947458..69950190-chr3:69973818..69976593,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10510993	1.00[ASN][1000 genomes]
rs11128144	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128145	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128146	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128147	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128148	0.87[EUR][1000 genomes]
rs11128149	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128150	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128151	1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12106831	1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106842	1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106907	1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106913	1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106915	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107208	1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107258	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107267	1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107268	0.87[EUR][1000 genomes]
rs12107403	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107405	1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107409	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107473	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107744	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12108172	1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108174	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430600	0.87[EUR][1000 genomes]
rs1532199	1.00[CHB][hapmap]
rs17006441	1.00[CHB][hapmap]
rs17006565	1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006574	0.89[EUR][1000 genomes]
rs17006578	1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006580	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006582	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006587	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006593	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006595	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006597	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006601	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006609	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28480308	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61479859	1.00[ASN][1000 genomes]
rs6549252	1.00[CHB][hapmap]
rs724794	1.00[CHB][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs73838686	1.00[ASN][1000 genomes]
rs9820221	1.00[CHB][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9827888	1.00[CHB][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9837137	0.89[EUR][1000 genomes]
rs9840417	1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843596	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843611	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9847658	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9866423	1.00[CHB][hapmap]
rs9882545	1.00[YRI][hapmap]
rs9882576	1.00[CHB][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9917631	1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9917633	1.00[CHB][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs9917634	1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9917686	1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9917798	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9941978	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69917200-69951200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:69920800-69950800	Weak transcription	Ovary	ovary
3	chr3:69928600-69950800	Weak transcription	Pancreas	Pancrea
4	chr3:69928600-69951000	Weak transcription	Lung	lung
5	chr3:69935400-69950800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:69938600-69948400	Weak transcription	Aorta	Aorta
7	chr3:69938600-69949400	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:69938600-69950800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:69939600-69950800	Weak transcription	Right Ventricle	heart
10	chr3:69939600-69952800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:69940200-69949200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:69940800-69954200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:69941800-69953000	Enhancers	Fetal Heart	heart
14	chr3:69942800-69950800	Weak transcription	Gastric	stomach
15	chr3:69945400-69948400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:69946000-69948400	Weak transcription	Fetal Stomach	stomach
17	chr3:69946200-69949000	Weak transcription	Brain Anterior Caudate	brain
18	chr3:69946200-69951000	Weak transcription	Brain Angular Gyrus	brain
19	chr3:69946200-69951000	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:69946400-69948600	Weak transcription	Right Atrium	heart
21	chr3:69947400-69948000	Enhancers	Psoas Muscle	Psoas
22	chr3:69947600-69948000	Weak transcription	Left Ventricle	heart
23	chr3:69947800-69948400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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