Variant report

Variant	rs1532199
Chromosome Location	chr3:70113022-70113023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10510993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11128151	1.00[CHB][hapmap]
rs12106831	1.00[CHB][hapmap]
rs12106842	1.00[CHB][hapmap]
rs12106907	1.00[CHB][hapmap]
rs12106913	1.00[CHB][hapmap]
rs12107208	1.00[CHB][hapmap]
rs12107267	1.00[CHB][hapmap]
rs12107405	1.00[CHB][hapmap]
rs12107744	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs12108172	1.00[CHB][hapmap]
rs17006565	1.00[CHB][hapmap]
rs17006578	1.00[CHB][hapmap]
rs61479859	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs724794	1.00[CHB][hapmap]
rs73838686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9310177	1.00[CHB][hapmap]
rs9820221	1.00[CHB][hapmap]
rs9827888	1.00[CHB][hapmap]
rs9840417	1.00[CHB][hapmap]
rs9843596	1.00[CHB][hapmap]
rs9843611	1.00[CHB][hapmap]
rs9847658	1.00[CHB][hapmap]
rs9866423	1.00[CHB][hapmap]
rs9882576	1.00[CHB][hapmap]
rs9917631	1.00[CHB][hapmap]
rs9917633	1.00[CHB][hapmap]
rs9917634	1.00[CHB][hapmap]
rs9917686	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70107400-70116800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:70107400-70120400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:70107600-70120200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:70112200-70113200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:70112600-70113200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:70112600-70115200	Enhancers	Fetal Brain Male	brain
7	chr3:70112600-70120600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:70112800-70113200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:70112800-70113800	Enhancers	Brain Substantia Nigra	brain
10	chr3:70112800-70114200	Enhancers	Fetal Brain Female	brain
11	chr3:70112800-70115000	Enhancers	Brain Hippocampus Middle	brain
12	chr3:70113000-70113200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr3:70113000-70113400	Enhancers	Brain Germinal Matrix	brain
14	chr3:70113000-70117600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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