Variant report

Variant	rs7633610
Chromosome Location	chr3:70124415-70124416
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:70123287..70127248-chr3:70127546..70130519,3	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs12488275	1.00[EUR][1000 genomes]
rs13318952	1.00[EUR][1000 genomes]
rs13319628	1.00[EUR][1000 genomes]
rs13321870	1.00[EUR][1000 genomes]
rs13325308	1.00[EUR][1000 genomes]
rs13325643	1.00[EUR][1000 genomes]
rs28545381	1.00[EUR][1000 genomes]
rs28548134	1.00[EUR][1000 genomes]
rs28583802	1.00[EUR][1000 genomes]
rs55906238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56086555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57240203	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59761935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60327342	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60618858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61545912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61678936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6770281	1.00[EUR][1000 genomes]
rs6797799	1.00[EUR][1000 genomes]
rs73836017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836025	1.00[AMR][1000 genomes]
rs73836026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836029	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836030	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836031	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836034	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836035	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836037	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836039	1.00[AMR][1000 genomes]
rs73836041	1.00[AMR][1000 genomes]
rs73836042	1.00[AMR][1000 genomes]
rs73836043	1.00[AMR][1000 genomes]
rs73836046	1.00[AMR][1000 genomes]
rs73836049	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836053	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836054	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836056	1.00[AMR][1000 genomes]
rs73836057	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836058	1.00[AMR][1000 genomes]
rs73836059	1.00[AMR][1000 genomes]
rs73836089	1.00[AMR][1000 genomes]
rs73836091	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836092	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836094	1.00[AMR][1000 genomes]
rs73836095	1.00[AMR][1000 genomes]
rs73838685	1.00[AMR][1000 genomes]
rs7620183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621139	1.00[EUR][1000 genomes]
rs7626775	1.00[EUR][1000 genomes]
rs7631251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9814696	1.00[AMR][1000 genomes]
rs9824748	1.00[EUR][1000 genomes]
rs9830619	1.00[EUR][1000 genomes]
rs9836115	1.00[EUR][1000 genomes]
rs9836196	1.00[EUR][1000 genomes]
rs9836245	1.00[EUR][1000 genomes]
rs9837652	1.00[EUR][1000 genomes]
rs9837698	1.00[EUR][1000 genomes]
rs9839441	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9840427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9843425	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9874322	1.00[EUR][1000 genomes]
rs9879292	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70121600-70125400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:70121600-70125600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:70121600-70127000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:70121600-70128200	Weak transcription	Fetal Stomach	stomach
5	chr3:70121800-70125200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:70121800-70125400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:70122200-70125000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:70122200-70125200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:70122400-70125200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:70122400-70125200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:70122400-70125600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:70124200-70125600	Weak transcription	Aorta	Aorta
13	chr3:70124200-70126200	Enhancers	Fetal Heart	heart

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