Variant report

Variant	rs73836054
Chromosome Location	chr3:70116801-70116802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs55906238	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56086555	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57240203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59761935	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60327342	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60618858	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61545912	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61678936	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836017	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836019	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836023	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836025	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836026	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836027	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836029	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836030	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836031	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836032	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836034	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836035	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836037	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836039	1.00[AMR][1000 genomes]
rs73836041	1.00[AMR][1000 genomes]
rs73836042	1.00[AMR][1000 genomes]
rs73836043	1.00[AMR][1000 genomes]
rs73836046	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836056	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836057	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836058	1.00[AMR][1000 genomes]
rs73836059	1.00[AMR][1000 genomes]
rs73836089	1.00[AMR][1000 genomes]
rs73836091	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836094	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836095	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838685	1.00[AMR][1000 genomes]
rs7620183	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7631251	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7633610	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9814696	1.00[AMR][1000 genomes]
rs9839441	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9840427	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9843425	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70107400-70120400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:70107600-70120200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:70112600-70120600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:70113000-70117600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:70113800-70119800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:70113800-70120200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:70113800-70120400	Weak transcription	Brain Anterior Caudate	brain
8	chr3:70113800-70120400	Weak transcription	Brain Substantia Nigra	brain
9	chr3:70113800-70123800	Weak transcription	Gastric	stomach
10	chr3:70114000-70117000	Weak transcription	Psoas Muscle	Psoas
11	chr3:70115000-70120200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:70115000-70120200	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:70116000-70117200	Weak transcription	Aorta	Aorta
14	chr3:70116600-70117600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr3:70116800-70117000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr3:70116800-70117000	Bivalent Enhancer	HSMMtube	muscle
17	chr3:70116800-70117200	Flanking Active TSS	Fetal Heart	heart
18	chr3:70116800-70118200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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