Variant report

Variant	rs1492056
Chromosome Location	chr3:70110821-70110822
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1021413	0.93[CHD][hapmap];0.94[JPT][hapmap]
rs1027233	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1027234	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1157456	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11923682	0.81[AMR][1000 genomes]
rs11926368	0.81[AMR][1000 genomes]
rs12495230	0.84[CEU][hapmap];0.84[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes]
rs1388649	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1491686	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1491695	0.89[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1491697	0.83[AFR][1000 genomes]
rs1491698	0.84[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs1492055	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1546075	0.81[AMR][1000 genomes]
rs1873583	0.80[AMR][1000 genomes]
rs1873584	0.81[AMR][1000 genomes]
rs2131122	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2172211	0.93[CHD][hapmap];0.94[JPT][hapmap]
rs28524674	0.81[AMR][1000 genomes]
rs3821364	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs4855453	0.93[CHD][hapmap];0.94[JPT][hapmap]
rs4855454	0.94[JPT][hapmap]
rs4855455	0.94[JPT][hapmap]
rs6549261	0.84[CEU][hapmap];0.84[CHB][hapmap];0.83[CHD][hapmap];0.80[JPT][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes]
rs6549262	0.81[AMR][1000 genomes]
rs6549264	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6549265	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6549266	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6549267	0.90[AFR][1000 genomes]
rs6772684	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6809508	0.81[AMR][1000 genomes]
rs704246	0.93[CHD][hapmap];0.89[JPT][hapmap]
rs7619924	0.96[YRI][hapmap]
rs7634340	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7634564	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7647661	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7651972	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9310178	0.85[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs9310179	0.85[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes]
rs9310180	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs956436	0.81[AMR][1000 genomes]
rs9809122	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9815287	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9834141	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9839734	0.81[AMR][1000 genomes]
rs9840397	0.81[AMR][1000 genomes]
rs9840590	0.81[AMR][1000 genomes]
rs9840951	0.86[AFR][1000 genomes]
rs9849031	0.81[AMR][1000 genomes]
rs9851891	0.88[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9863457	0.81[AMR][1000 genomes]
rs9868203	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70107400-70112200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:70107400-70112600	Weak transcription	Fetal Brain Male	brain
3	chr3:70107400-70116800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:70107400-70120400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:70107600-70112600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:70107600-70112600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:70107600-70120200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:70107800-70112400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:70110200-70111200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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