Variant report

Variant	rs9809122
Chromosome Location	chr3:70084253-70084254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1021413	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs1027233	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1027234	0.82[AMR][1000 genomes]
rs1157456	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11923682	0.80[AMR][1000 genomes]
rs11926368	0.80[AMR][1000 genomes]
rs12495230	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1388649	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1491686	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1491694	0.80[AMR][1000 genomes]
rs1491695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1491697	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1491698	0.86[CEU][hapmap];0.90[CHB][hapmap];0.80[AMR][1000 genomes]
rs1492055	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1492056	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1546075	0.80[AMR][1000 genomes]
rs1873584	0.80[AMR][1000 genomes]
rs2101636	0.80[AMR][1000 genomes]
rs2131122	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2172211	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs28524674	0.80[AMR][1000 genomes]
rs3821364	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs4855453	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs4855454	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs4855455	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs576	0.80[CHB][hapmap]
rs6549261	0.89[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes]
rs6549262	0.80[AMR][1000 genomes]
rs6549264	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6549265	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6549266	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6549267	0.91[AFR][1000 genomes]
rs6772684	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6809508	0.80[AMR][1000 genomes]
rs704246	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs7619924	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs7634340	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7634564	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7647661	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9310178	0.86[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes]
rs9310179	0.89[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes]
rs9310180	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs956436	0.80[AMR][1000 genomes]
rs9815287	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9834141	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9839734	0.80[AMR][1000 genomes]
rs9840397	0.80[AMR][1000 genomes]
rs9840590	0.80[AMR][1000 genomes]
rs9840951	0.91[AFR][1000 genomes]
rs9849031	0.80[AMR][1000 genomes]
rs9851891	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9863457	0.80[AMR][1000 genomes]
rs9868203	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9809122	RP11-460N16.1	cis	Artery Aorta	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70063800-70098000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links