Variant report

Variant	rs9310180
Chromosome Location	chr3:70060846-70060847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:70048808..70051544-chr3:70059297..70061000,2	K562	blood:

Variant related genes	Relation type
ENSG00000240405	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1021413	0.85[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1027233	0.83[AMR][1000 genomes]
rs1157456	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11718882	0.81[ASN][1000 genomes]
rs11923682	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11926368	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12495230	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1388649	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1491686	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1491688	0.81[ASN][1000 genomes]
rs1491695	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1491698	0.93[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1492055	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1492056	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1546075	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17727959	0.85[ASN][1000 genomes]
rs1844877	0.81[ASN][1000 genomes]
rs1873583	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1873584	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1907646	0.81[ASN][1000 genomes]
rs2131026	0.81[ASN][1000 genomes]
rs2131122	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2172211	0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs28524674	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34790356	0.82[ASN][1000 genomes]
rs35180789	0.86[ASN][1000 genomes]
rs35416604	0.81[ASN][1000 genomes]
rs36125122	0.81[ASN][1000 genomes]
rs3821364	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs3967688	0.84[ASN][1000 genomes]
rs4855331	0.81[ASN][1000 genomes]
rs4855453	0.85[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4855454	0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs4855455	0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs4855456	0.81[ASN][1000 genomes]
rs55842620	0.81[ASN][1000 genomes]
rs56351003	0.86[ASN][1000 genomes]
rs576	0.80[CHB][hapmap]
rs6549254	0.81[ASN][1000 genomes]
rs6549257	0.81[ASN][1000 genomes]
rs6549258	0.81[ASN][1000 genomes]
rs6549259	0.81[ASN][1000 genomes]
rs6549260	0.84[ASN][1000 genomes]
rs6549261	0.92[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6549262	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6549264	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6549265	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6549266	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6771970	0.81[ASN][1000 genomes]
rs6772684	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6784666	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6809508	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs704246	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs73119519	0.81[ASN][1000 genomes]
rs7429562	0.81[ASN][1000 genomes]
rs7431913	0.81[ASN][1000 genomes]
rs7634340	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7634564	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7647661	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs902711	0.86[ASN][1000 genomes]
rs902712	0.86[ASN][1000 genomes]
rs923702	0.81[ASN][1000 genomes]
rs9310178	0.93[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9310179	0.92[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs956436	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9809122	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9815287	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834141	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9839734	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9840397	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9840590	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9849031	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9851891	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9863457	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9868203	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3507809	chr3:70058262-70066160	Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3507810	chr3:70058712-70066010	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3507811	chr3:70058712-70066010	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9310180	RP11-460N16.1	cis	Artery Aorta	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70041200-70061000	Weak transcription	Aorta	Aorta
2	chr3:70055800-70061600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:70059600-70061400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:70060400-70061200	Enhancers	Colon Smooth Muscle	Colon
5	chr3:70060400-70061600	Enhancers	Fetal Stomach	stomach
6	chr3:70060800-70061600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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