Variant report

Variant	rs149261
Chromosome Location	chr17:15587300-15587301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:104)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:104 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:15587053-15587863	MCF-7	breast:	n/a	n/a
2	MYC	chr17:15587176-15587745	K562	blood:	n/a	n/a
3	CTCF	chr17:15587220-15587370	GM06990	blood:	n/a	n/a
4	POLR2A	chr17:15586583-15588019	PFSK-1	brain:	n/a	n/a
5	RXRA	chr17:15587282-15587564	GM12878	blood:	n/a	n/a
6	POLR2A	chr17:15586938-15587682	GM12891	blood:	n/a	n/a
7	CTCF	chr17:15587220-15587370	AG09309	skin:	n/a	n/a
8	POLR2A	chr17:15587067-15587783	K562	blood:	n/a	n/a
9	CTCF	chr17:15587260-15587410	HRPEpiC	eye:	n/a	n/a
10	IRF4	chr17:15587300-15587703	GM12878	blood:	n/a	n/a
11	EBF1	chr17:15587095-15587415	GM12878	blood:	n/a	n/a
12	MXI1	chr17:15586961-15587881	IMR90	lung:	n/a	n/a
13	PAX5	chr17:15587149-15587578	GM12878	blood:	n/a	n/a
14	CTCF	chr17:15587185-15587590	K562	blood:	n/a	n/a
15	CTCF	chr17:15587220-15587370	GM12867	blood:	n/a	n/a
16	POLR2A	chr17:15587193-15587744	Hela-S3	cervix:	n/a	n/a
17	GABPA	chr17:15587272-15587737	HepG2	liver:	n/a	n/a
18	MAX	chr17:15587155-15587440	K562	blood:	n/a	n/a
19	POLR2A	chr17:15587294-15587751	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr17:15587248-15587787	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr17:15586884-15587839	GM12878	blood:	n/a	n/a
22	GABPA	chr17:15587177-15587931	K562	blood:	n/a	n/a
23	CTCF	chr17:15587240-15587390	SK-N-SH_RA	brain:	n/a	n/a
24	POLR2A	chr17:15587185-15587899	H1-hESC	embryonic stem cell:	n/a	n/a
25	PAX5	chr17:15587272-15587615	GM12878	blood:	n/a	n/a
26	CTCF	chr17:15587240-15587390	K562	blood:	n/a	n/a
27	POLR2A	chr17:15587008-15587750	SK-N-SH	brain:	n/a	n/a
28	CTCF	chr17:15587240-15587390	SAEC	small airway:	n/a	n/a
29	CTCF	chr17:15587220-15587370	GM12874	blood:	n/a	n/a
30	GABPA	chr17:15587233-15587856	Hela-S3	cervix:	n/a	n/a
31	CTCF	chr17:15587240-15587390	HBMEC	blood vessel:	n/a	n/a
32	POLR2A	chr17:15586879-15587733	GM12892	blood:	n/a	n/a
33	TCF12	chr17:15587208-15587916	A549	lung:	n/a	n/a
34	POLR2A	chr17:15586523-15587888	HepG2	liver:	n/a	n/a
35	HCFC1	chr17:15586958-15588037	Hela-S3	cervix:	n/a	n/a
36	SIN3AK20	chr17:15587248-15587686	A549	lung:	n/a	n/a
37	GABPA	chr17:15587251-15587779	GM12878	blood:	n/a	n/a
38	CTCF	chr17:15587220-15587370	GM12865	blood:	n/a	n/a
39	CTCF	chr17:15587250-15587483	K562	blood:	n/a	n/a
40	POLR2A	chr17:15586914-15587782	GM12892	blood:	n/a	n/a
41	POLR2A	chr17:15586975-15587773	K562	blood:	n/a	n/a
42	POLR2A	chr17:15587255-15587833	HUVEC	blood vessel:	n/a	n/a
43	POLR2A	chr17:15587231-15587902	PFSK-1	brain:	n/a	n/a
44	POU2F2	chr17:15587211-15587706	GM12878	blood:	n/a	chr17:15587370-15587382
45	POLR2A	chr17:15587024-15587710	A549	lung:	n/a	n/a
46	CTCF	chr17:15587178-15587694	K562	blood:	n/a	n/a
47	CTCF	chr17:15587263-15587557	GM12878	blood:	n/a	n/a
48	ZNF143	chr17:15587127-15587820	GM12878	blood:	n/a	chr17:15587641-15587659 chr17:15587650-15587659 chr17:15587648-15587657
49	GABPA	chr17:15587270-15587743	GM12878	blood:	n/a	n/a
50	HEY1	chr17:15586987-15587788	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:15587279-15587329	T-47D	breast:	n/a
2	chr17:15587279-15587329	HepG2	liver:	n/a
3	chr17:15587279-15587329	ovcar-3	ovarian:	n/a
4	chr17:15587279-15587329	LNCaP	prostate:	n/a
5	chr17:15587279-15587329	Jurkat	blood:	n/a
6	chr17:15587279-15587329	BE2_C	brain:	n/a
7	chr17:15587279-15587329	ECC-1	luminal epithelium:	n/a
8	chr17:15587279-15587329	Hepatocyte	liver:	n/a
9	chr17:15587279-15587329	Caco-2	colon:	n/a
10	chr17:15587279-15587329	HRPEpiC	eye:	n/a
11	chr17:15587279-15587329	HCPEpiC	choroid plexus:	n/a
12	chr17:15587279-15587329	HCM	heart:	n/a
13	chr17:15587279-15587329	PFSK-1	brain:	n/a
14	chr17:15587279-15587329	U87	brain:	n/a
15	chr17:15587279-15587329	H1-hESC	embryonic stem cell:	embryo
16	chr17:15587279-15587329	HUVEC	blood vessel:	n/a
17	chr17:15587279-15587329	AG09319	gingival:	n/a
18	chr17:15587279-15587329	HL-60	blood:	n/a
19	chr17:15587279-15587329	SAEC	small airway:	n/a
20	chr17:15587279-15587329	Hela-S3	cervix:	n/a
21	chr17:15587279-15587329	K562	blood:	n/a
22	chr17:15587279-15587329	A549	lung:	n/a
23	chr17:15587279-15587329	PANC-1	pancreas:	n/a
24	chr17:15587279-15587329	AG09309	skin:	n/a
25	chr17:15587279-15587329	PrEC	prostate:	n/a
26	chr17:15587279-15587329	SKMC	muscle:	n/a
27	chr17:15587279-15587329	GM12892	blood:	n/a
28	chr17:15587279-15587329	ProgFib	skin:	n/a
29	chr17:15587279-15587329	MCF-7	breast:	n/a
30	chr17:15587279-15587329	RPTEC	kidney:	n/a
31	chr17:15587279-15587329	GM12891	blood:	n/a
32	chr17:15587279-15587329	GM06990	blood:	n/a
33	chr17:15587279-15587329	CMK	blood:	n/a
34	chr17:15587279-15587329	HCT-116	colon:	n/a
35	chr17:15587279-15587329	HEK293	kidney:	embryo
36	chr17:15587279-15587329	NH-A	brain:	n/a
37	chr17:15587279-15587329	NB4	blood:	n/a
38	chr17:15587279-15587329	NHBE	bronchial:	n/a
39	chr17:15587279-15587329	GM12878	blood:	n/a
40	chr17:15587279-15587329	HIPEpiC	eye:	n/a
41	chr17:15587279-15587329	HRE	kidney:	n/a
42	chr17:15587279-15587329	HNPCEpiC	eye:	n/a
43	chr17:15587279-15587329	AG04450	lung:	fetal
44	chr17:15587279-15587329	BJ	skin:	n/a
45	chr17:15587279-15587329	NHDF-neo	bronchial:	n/a
46	chr17:15587279-15587329	GM19239	blood:	n/a
47	chr17:15587279-15587329	HCF	heart:	n/a
48	chr17:15587279-15587329	HAEpiC	amniotic membrane:	n/a
49	chr17:15587279-15587329	AG04449	skin:	fetal
50	chr17:15587279-15587329	SK-N-SH	brain:	n/a

No data

Variant related genes	Relation type
TRIM16	TF binding region
TRIM16	CpG island

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs110675	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs163385	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs170912	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs489698	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs494460	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs498213	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs671150	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs685251	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv457695	chr17:15447364-15611495	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv574462	chr17:15447364-15611495	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
7	nsv520426	chr17:15554561-15647723	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv522130	chr17:15563393-15592762	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv518620	chr17:15563393-15608194	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15586400-15587400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
2	chr17:15586400-15587800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:15586400-15588000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr17:15586400-15588000	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr17:15586600-15587400	Enhancers	Fetal Heart	heart
6	chr17:15586600-15587400	Flanking Active TSS	Dnd41	blood
7	chr17:15586600-15588000	Active TSS	Brain Cingulate Gyrus	brain
8	chr17:15586600-15588000	Active TSS	Brain Germinal Matrix	brain
9	chr17:15586600-15588200	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr17:15586600-15588200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:15586800-15588000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr17:15586800-15588000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr17:15586800-15588000	Active TSS	Muscle Satellite Cultured Cells	--
14	chr17:15586800-15588000	Active TSS	HSMMtube	muscle
15	chr17:15586800-15588000	Active TSS	NH-A	brain
16	chr17:15586800-15588000	Active TSS	NHDF-Ad	bronchial
17	chr17:15586800-15588200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr17:15586800-15588200	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr17:15586800-15588200	Active TSS	HepG2	liver
20	chr17:15586800-15588200	Active TSS	K562	blood
21	chr17:15587000-15587400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr17:15587000-15587400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr17:15587000-15587400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
24	chr17:15587000-15587400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr17:15587000-15587400	Flanking Active TSS	Primary B cells from peripheral blood	blood
26	chr17:15587000-15587400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
27	chr17:15587000-15587400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr17:15587000-15587400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr17:15587000-15587400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr17:15587000-15587400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr17:15587000-15587400	Flanking Active TSS	Fetal Muscle Trunk	muscle
32	chr17:15587000-15587400	Flanking Active TSS	Fetal Muscle Leg	muscle
33	chr17:15587000-15587400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr17:15587000-15587600	Active TSS	Small Intestine	intestine
35	chr17:15587000-15587600	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr17:15587000-15587800	Active TSS	Fetal Brain Male	brain
37	chr17:15587000-15587800	Active TSS	Fetal Thymus	thymus
38	chr17:15587000-15588000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr17:15587000-15588000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr17:15587000-15588000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:15587000-15588000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr17:15587000-15588000	Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr17:15587000-15588000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr17:15587000-15588000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr17:15587000-15588000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
46	chr17:15587000-15588000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr17:15587000-15588000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
48	chr17:15587000-15588000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr17:15587000-15588000	Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr17:15587000-15588000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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