Variant report

Variant	rs1495365
Chromosome Location	chr3:55802668-55802669
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1495366	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4955877	0.88[CHB][hapmap]
rs4955878	0.82[CHB][hapmap]
rs58315468	0.92[ASN][1000 genomes]
rs9815001	0.94[CHB][hapmap];0.81[CHD][hapmap];0.87[MEX][hapmap]
rs9835091	0.93[CHB][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs9852746	0.94[CHB][hapmap];0.87[CHD][hapmap];0.96[LWK][hapmap];0.87[MEX][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs9852888	0.94[CHB][hapmap];0.95[LWK][hapmap];0.87[MEX][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs9853067	0.93[CHB][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs9857120	0.84[AFR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1495365	GLYCTK	cis	cerebellum	SCAN
rs1495365	IQCF1	cis	cerebellum	SCAN
rs1495365	RPL29	cis	cerebellum	SCAN
rs1495365	HESX1	cis	cerebellum	SCAN
rs1495365	RPP14	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55801800-55804000	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links