Variant report

Variant	rs9815001
Chromosome Location	chr3:55802982-55802983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1495365	0.94[CHB][hapmap];0.81[CHD][hapmap];0.87[MEX][hapmap]
rs1495366	0.94[CHB][hapmap];0.82[CHD][hapmap]
rs1495368	0.80[ASN][1000 genomes]
rs1495369	0.80[ASN][1000 genomes]
rs35664654	0.80[ASN][1000 genomes]
rs4459870	0.84[ASN][1000 genomes]
rs4955877	0.82[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs4955878	0.81[CEU][hapmap];0.88[CHB][hapmap];0.84[CHD][hapmap];0.83[JPT][hapmap]
rs4955882	0.86[ASN][1000 genomes]
rs4955884	0.86[ASN][1000 genomes]
rs4974144	0.80[ASN][1000 genomes]
rs4974147	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60551886	0.80[ASN][1000 genomes]
rs61072124	0.80[ASN][1000 genomes]
rs73076938	0.80[ASN][1000 genomes]
rs73076939	0.80[ASN][1000 genomes]
rs9835091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9840522	0.80[ASN][1000 genomes]
rs9852746	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9852888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9853067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9854025	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9854247	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9857120	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9860951	0.80[ASN][1000 genomes]
rs9874792	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9815001	RPL29	cis	cerebellum	SCAN
rs9815001	HESX1	cis	cerebellum	SCAN
rs9815001	TWF2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55801800-55804000	Weak transcription	Pancreas	Pancrea

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