Variant report

Variant	rs9835091
Chromosome Location	chr3:55803291-55803292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12631767	0.82[ASN][1000 genomes]
rs1495365	0.93[CHB][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs1495366	0.93[CHB][hapmap]
rs1495368	0.84[ASN][1000 genomes]
rs1495369	0.84[ASN][1000 genomes]
rs17272960	0.80[ASN][1000 genomes]
rs17332241	0.81[ASN][1000 genomes]
rs35664654	0.84[ASN][1000 genomes]
rs4459870	0.87[ASN][1000 genomes]
rs4521190	0.80[ASN][1000 genomes]
rs4955877	0.83[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap]
rs4955878	0.81[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap]
rs4955879	0.81[ASN][1000 genomes]
rs4955882	0.90[ASN][1000 genomes]
rs4955883	0.80[ASN][1000 genomes]
rs4955884	0.89[ASN][1000 genomes]
rs4974113	0.82[ASN][1000 genomes]
rs4974144	0.84[ASN][1000 genomes]
rs4974147	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56912263	0.80[ASN][1000 genomes]
rs57802485	0.80[ASN][1000 genomes]
rs60551886	0.84[ASN][1000 genomes]
rs61072124	0.84[ASN][1000 genomes]
rs73076938	0.84[ASN][1000 genomes]
rs73076939	0.84[ASN][1000 genomes]
rs73076947	0.80[ASN][1000 genomes]
rs7615473	0.80[ASN][1000 genomes]
rs9815001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9840522	0.84[ASN][1000 genomes]
rs9852746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9854025	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9854247	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9857120	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9860951	0.84[ASN][1000 genomes]
rs9874792	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55801800-55804000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links