Variant report

Variant	rs73076947
Chromosome Location	chr3:55815582-55815583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12631767	0.96[ASN][1000 genomes]
rs1495368	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1495369	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17272960	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17332241	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17714443	0.88[ASN][1000 genomes]
rs2168818	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2315943	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35664654	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4129821	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4129822	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4129823	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4260395	0.86[ASN][1000 genomes]
rs4299453	0.97[ASN][1000 genomes]
rs4493400	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4521190	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4955879	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4955880	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955881	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955883	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974144	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4974145	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4974146	0.86[ASN][1000 genomes]
rs56912263	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57802485	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60551886	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61072124	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72877116	0.84[ASN][1000 genomes]
rs73076938	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73076939	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7641474	0.91[ASN][1000 genomes]
rs9835091	0.80[ASN][1000 genomes]
rs9838012	0.86[ASN][1000 genomes]
rs9846380	0.92[ASN][1000 genomes]
rs9852746	0.80[ASN][1000 genomes]
rs9852888	0.80[ASN][1000 genomes]
rs9853067	0.81[ASN][1000 genomes]
rs9857120	0.81[ASN][1000 genomes]
rs9866297	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55810600-55816200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:55814600-55815600	Enhancers	Fetal Heart	heart
3	chr3:55814800-55817400	Enhancers	Spleen	Spleen
4	chr3:55815000-55816200	Weak transcription	Pancreas	Pancrea
5	chr3:55815200-55816600	Enhancers	Gastric	stomach

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