Variant report

Variant	rs4955880
Chromosome Location	chr3:55816425-55816426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12631767	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1495368	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1495369	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17272960	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17332241	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17714443	0.91[ASN][1000 genomes]
rs2168818	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2315943	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35664654	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4129821	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4129822	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4129823	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4260395	0.85[ASN][1000 genomes]
rs4299453	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4493400	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4521190	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955877	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap]
rs4955878	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap]
rs4955879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4955881	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4955883	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974144	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974145	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974146	0.85[ASN][1000 genomes]
rs56912263	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57802485	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60551886	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61072124	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72877116	0.83[ASN][1000 genomes]
rs73076938	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73076939	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73076947	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7641474	0.90[ASN][1000 genomes]
rs9835091	0.84[CHB][hapmap]
rs9838012	0.85[ASN][1000 genomes]
rs9846380	0.91[ASN][1000 genomes]
rs9853067	0.83[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9857120	0.81[ASN][1000 genomes]
rs9866297	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55814800-55817400	Enhancers	Spleen	Spleen
2	chr3:55815200-55816600	Enhancers	Gastric	stomach
3	chr3:55815600-55816600	Weak transcription	Fetal Heart	heart
4	chr3:55816000-55816800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr3:55816200-55816800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:55816200-55817200	Enhancers	Pancreas	Pancrea
7	chr3:55816400-55816600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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