Variant report

Variant	rs9866297
Chromosome Location	chr3:55810766-55810767
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12631767	0.91[ASN][1000 genomes]
rs1495368	0.93[ASN][1000 genomes]
rs1495369	0.93[ASN][1000 genomes]
rs17272960	0.89[ASN][1000 genomes]
rs17332241	0.90[ASN][1000 genomes]
rs2168818	0.84[ASN][1000 genomes]
rs35664654	0.93[ASN][1000 genomes]
rs4129821	0.84[ASN][1000 genomes]
rs4129822	0.84[ASN][1000 genomes]
rs4129823	0.83[ASN][1000 genomes]
rs4260395	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4299453	0.88[ASN][1000 genomes]
rs4459870	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4493400	0.84[ASN][1000 genomes]
rs4521190	0.89[ASN][1000 genomes]
rs4955877	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs4955878	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs4955879	0.90[ASN][1000 genomes]
rs4955880	0.88[ASN][1000 genomes]
rs4955881	0.88[ASN][1000 genomes]
rs4955882	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4955883	0.89[ASN][1000 genomes]
rs4955884	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4974144	0.93[ASN][1000 genomes]
rs4974145	0.84[ASN][1000 genomes]
rs4974146	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56912263	0.89[ASN][1000 genomes]
rs57802485	0.89[ASN][1000 genomes]
rs60551886	0.93[ASN][1000 genomes]
rs61072124	0.93[ASN][1000 genomes]
rs72877116	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73076938	0.93[ASN][1000 genomes]
rs73076939	0.93[ASN][1000 genomes]
rs73076947	0.89[ASN][1000 genomes]
rs7615473	0.80[EUR][1000 genomes]
rs7641474	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9815001	0.81[CHB][hapmap]
rs9838012	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9840522	0.81[EUR][1000 genomes]
rs9846380	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9852746	0.81[CHB][hapmap]
rs9852888	0.81[CHB][hapmap]
rs9853067	0.91[JPT][hapmap]
rs9860951	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3383374	chr3:55810707-55811121	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55810600-55816200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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