Variant report

Variant	rs4493400
Chromosome Location	chr3:55847845-55847846
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12631767	0.93[ASN][1000 genomes]
rs1495368	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1495369	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17272960	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17332241	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17714443	0.91[ASN][1000 genomes]
rs1870274	0.88[EUR][1000 genomes]
rs2168818	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2315943	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35664654	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4129821	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129822	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129823	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4260395	0.93[ASN][1000 genomes]
rs4299453	0.96[ASN][1000 genomes]
rs4521190	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4955877	0.86[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs4955878	0.85[CEU][hapmap];0.88[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap]
rs4955879	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4955880	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4955881	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4955883	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974144	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4974145	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974146	0.93[ASN][1000 genomes]
rs56912263	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57059589	0.88[EUR][1000 genomes]
rs57802485	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60551886	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61072124	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72877116	0.91[ASN][1000 genomes]
rs73076938	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73076939	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73076947	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7641474	0.88[ASN][1000 genomes]
rs9838012	0.93[ASN][1000 genomes]
rs9846380	0.87[ASN][1000 genomes]
rs9853067	0.91[JPT][hapmap]
rs9854025	0.84[ASN][1000 genomes]
rs9854247	0.84[ASN][1000 genomes]
rs9866297	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv590361	chr3:55834871-55876104	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55846400-55848000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:55847400-55848000	Enhancers	Adipose Nuclei	Adipose
3	chr3:55847400-55848000	Enhancers	Placenta	Placenta
4	chr3:55847600-55860200	Weak transcription	Fetal Lung	lung

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