Variant report

Variant	rs4974145
Chromosome Location	chr3:55829851-55829852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12631767	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1495365	0.82[CHB][hapmap]
rs1495366	0.82[CHB][hapmap]
rs1495368	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1495369	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17272960	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17332241	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17714443	0.91[ASN][1000 genomes]
rs1870274	0.88[EUR][1000 genomes]
rs2168818	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2315943	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35664654	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4129821	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129822	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129823	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4260395	0.93[ASN][1000 genomes]
rs4299453	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4493400	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4521190	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4955877	0.86[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs4955878	0.84[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs4955879	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4955880	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4955881	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4955883	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974144	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4974146	0.93[ASN][1000 genomes]
rs56912263	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57059589	0.88[EUR][1000 genomes]
rs57802485	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60551886	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61072124	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72877116	0.91[ASN][1000 genomes]
rs73076938	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73076939	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73076947	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7641474	0.88[ASN][1000 genomes]
rs9815001	0.88[CHB][hapmap]
rs9835091	0.85[CHB][hapmap]
rs9838012	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9846380	0.87[ASN][1000 genomes]
rs9852746	0.88[CHB][hapmap]
rs9852888	0.88[CHB][hapmap]
rs9853067	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs9854025	0.84[ASN][1000 genomes]
rs9854247	0.84[ASN][1000 genomes]
rs9866297	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55817200-55830600	Weak transcription	Pancreas	Pancrea
2	chr3:55825200-55830400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:55825200-55831000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:55826400-55830600	Weak transcription	Fetal Lung	lung
5	chr3:55826800-55830800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:55827000-55830200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:55829200-55831600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:55829400-55830400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:55829600-55831200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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