Variant report

Variant	rs9846380
Chromosome Location	chr3:55814556-55814557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12631767	0.90[ASN][1000 genomes]
rs1495368	0.90[ASN][1000 genomes]
rs1495369	0.90[ASN][1000 genomes]
rs17272960	0.92[ASN][1000 genomes]
rs17332241	0.93[ASN][1000 genomes]
rs17714443	0.82[ASN][1000 genomes]
rs2168818	0.87[ASN][1000 genomes]
rs35664654	0.90[ASN][1000 genomes]
rs4129821	0.87[ASN][1000 genomes]
rs4129822	0.87[ASN][1000 genomes]
rs4129823	0.86[ASN][1000 genomes]
rs4260395	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4299453	0.91[ASN][1000 genomes]
rs4459870	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4493400	0.87[ASN][1000 genomes]
rs4521190	0.92[ASN][1000 genomes]
rs4955879	0.93[ASN][1000 genomes]
rs4955880	0.91[ASN][1000 genomes]
rs4955881	0.91[ASN][1000 genomes]
rs4955882	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4955883	0.92[ASN][1000 genomes]
rs4955884	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4974144	0.90[ASN][1000 genomes]
rs4974145	0.87[ASN][1000 genomes]
rs4974146	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56912263	0.92[ASN][1000 genomes]
rs57802485	0.92[ASN][1000 genomes]
rs60551886	0.90[ASN][1000 genomes]
rs61072124	0.90[ASN][1000 genomes]
rs72877116	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73076938	0.90[ASN][1000 genomes]
rs73076939	0.90[ASN][1000 genomes]
rs73076947	0.92[ASN][1000 genomes]
rs7615473	0.80[EUR][1000 genomes]
rs7641474	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9838012	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9840522	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9860951	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9866297	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55810600-55816200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:55811400-55814800	Weak transcription	Fetal Stomach	stomach
3	chr3:55813800-55814800	Weak transcription	Fetal Lung	lung

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