Variant report

Variant	rs4955884
Chromosome Location	chr3:55819819-55819820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1008	0.80[EUR][1000 genomes]
rs1495365	0.81[CHB][hapmap]
rs1495366	0.81[CHB][hapmap]
rs2315942	0.93[EUR][1000 genomes]
rs2315944	0.86[EUR][1000 genomes]
rs4246673	0.85[EUR][1000 genomes]
rs4459870	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4542991	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4572738	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4592994	0.80[EUR][1000 genomes]
rs4955882	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4974113	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4974147	0.84[ASN][1000 genomes]
rs4974148	0.85[EUR][1000 genomes]
rs55665761	0.82[EUR][1000 genomes]
rs6445754	0.88[EUR][1000 genomes]
rs6790618	0.80[EUR][1000 genomes]
rs7615473	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7616709	0.85[EUR][1000 genomes]
rs7617962	0.80[EUR][1000 genomes]
rs7641474	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9809248	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9815001	0.87[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs9828807	0.86[EUR][1000 genomes]
rs9835091	0.85[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs9840522	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9846380	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9852746	0.87[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs9852888	0.87[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs9853067	0.85[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs9854025	0.87[ASN][1000 genomes]
rs9854247	0.87[ASN][1000 genomes]
rs9857120	0.90[ASN][1000 genomes]
rs9860951	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9866297	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9874792	0.82[ASN][1000 genomes]
rs9879933	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55817200-55830600	Weak transcription	Pancreas	Pancrea
2	chr3:55819000-55820200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:55819000-55820600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:55819600-55821800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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