Variant report
| Variant | rs55665761 |
|---|---|
| Chromosome Location | chr3:55866502-55866503 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1008 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1542422 | 0.88[ASN][1000 genomes] |
| rs2315942 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2315944 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4246673 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4459870 | 0.82[EUR][1000 genomes] |
| rs4592994 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4955882 | 0.83[EUR][1000 genomes] |
| rs4955884 | 0.82[EUR][1000 genomes] |
| rs4974113 | 0.85[EUR][1000 genomes] |
| rs4974148 | 0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs55638022 | 0.80[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6790618 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6796871 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7615473 | 0.83[EUR][1000 genomes] |
| rs7616709 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7617962 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9815091 | 0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9828807 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9840522 | 0.84[EUR][1000 genomes] |
| rs9860951 | 0.84[EUR][1000 genomes] |
| rs9879933 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv590361 | chr3:55834871-55876104 | Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv1013063 | chr3:55835413-56173713 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:55865800-55866600 | Enhancers | HUES64 Cell Line | embryonic stem cell |
