Variant report

Variant	rs9840522
Chromosome Location	chr3:55843621-55843622
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1008	0.82[EUR][1000 genomes]
rs2315942	0.94[EUR][1000 genomes]
rs2315944	0.88[EUR][1000 genomes]
rs4246673	0.87[EUR][1000 genomes]
rs4260395	0.85[ASN][1000 genomes]
rs4459870	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4542991	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4572738	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4592994	0.82[EUR][1000 genomes]
rs4955882	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4955884	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4974113	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4974146	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4974147	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974148	0.86[EUR][1000 genomes]
rs55665761	0.84[EUR][1000 genomes]
rs6445754	0.88[EUR][1000 genomes]
rs6790618	0.82[EUR][1000 genomes]
rs6796871	0.81[EUR][1000 genomes]
rs72877116	0.83[ASN][1000 genomes]
rs7615473	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7616709	0.86[EUR][1000 genomes]
rs7617962	0.82[EUR][1000 genomes]
rs7641474	0.80[ASN][1000 genomes]
rs9809248	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9815001	0.80[ASN][1000 genomes]
rs9815091	0.81[EUR][1000 genomes]
rs9828807	0.88[EUR][1000 genomes]
rs9835091	0.84[ASN][1000 genomes]
rs9838012	0.85[ASN][1000 genomes]
rs9846380	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9852746	0.84[ASN][1000 genomes]
rs9852888	0.84[ASN][1000 genomes]
rs9853067	0.85[ASN][1000 genomes]
rs9854025	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9854247	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9857120	0.85[ASN][1000 genomes]
rs9860951	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866297	0.81[EUR][1000 genomes]
rs9874792	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9879933	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv590361	chr3:55834871-55876104	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55842400-55846400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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