Variant report

Variant	rs60551886
Chromosome Location	chr3:55809898-55809899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12631767	0.98[ASN][1000 genomes]
rs1495368	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495369	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272960	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17332241	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17714443	0.86[ASN][1000 genomes]
rs2168818	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2315943	0.83[EUR][1000 genomes]
rs35664654	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129821	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4129822	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4129823	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4260395	0.84[ASN][1000 genomes]
rs4299453	0.95[ASN][1000 genomes]
rs4493400	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4521190	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4955879	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955880	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4955881	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4955883	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4974144	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974145	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4974146	0.84[ASN][1000 genomes]
rs56912263	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57802485	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61072124	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72877116	0.82[ASN][1000 genomes]
rs73076938	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73076939	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73076947	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7641474	0.89[ASN][1000 genomes]
rs9815001	0.80[ASN][1000 genomes]
rs9835091	0.84[ASN][1000 genomes]
rs9838012	0.84[ASN][1000 genomes]
rs9846380	0.90[ASN][1000 genomes]
rs9852746	0.84[ASN][1000 genomes]
rs9852888	0.84[ASN][1000 genomes]
rs9853067	0.85[ASN][1000 genomes]
rs9857120	0.85[ASN][1000 genomes]
rs9866297	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55809200-55810400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:55809200-55810600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:55809400-55810000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:55809800-55810400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:55809800-55810400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:55809800-55810400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:55809800-55810600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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