Variant report

Variant	rs2315943
Chromosome Location	chr3:55863074-55863075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12631767	0.81[ASN][1000 genomes]
rs1495368	0.83[EUR][1000 genomes]
rs1495369	0.83[EUR][1000 genomes]
rs17272960	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17332241	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17714443	0.93[ASN][1000 genomes]
rs1870274	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2168818	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35664654	0.85[EUR][1000 genomes]
rs4129821	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4129822	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4129823	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4299453	0.84[ASN][1000 genomes]
rs4493400	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4521190	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4955879	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4955880	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4955881	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4955883	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4974144	0.83[EUR][1000 genomes]
rs4974145	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56912263	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57059589	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57802485	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60551886	0.83[EUR][1000 genomes]
rs61072124	0.83[EUR][1000 genomes]
rs73076938	0.83[EUR][1000 genomes]
rs73076939	0.83[EUR][1000 genomes]
rs73076947	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590361	chr3:55834871-55876104	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv3440427	chr3:55860016-55865704	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55861200-55863600	Weak transcription	Right Atrium	heart

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