Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1458067	0.85[EUR][1000 genomes]
rs1458068	0.84[EUR][1000 genomes]
rs17272960	0.86[EUR][1000 genomes]
rs17332241	0.80[EUR][1000 genomes]
rs17714443	0.87[ASN][1000 genomes]
rs1870274	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1993539	0.85[EUR][1000 genomes]
rs2168818	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2315943	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4129821	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4129822	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4129823	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4493400	0.88[EUR][1000 genomes]
rs4521190	0.88[EUR][1000 genomes]
rs4955881	0.86[EUR][1000 genomes]
rs4955883	0.86[EUR][1000 genomes]
rs4974145	0.88[EUR][1000 genomes]
rs56912263	0.88[EUR][1000 genomes]
rs57802485	0.88[EUR][1000 genomes]
rs72879133	0.84[EUR][1000 genomes]
rs9818424	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55879000-55888000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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