Variant report
| Variant | rs1495888 |
|---|---|
| Chromosome Location | chr3:86411414-86411415 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CADM2-9 | chr3:86411282-86411624 | NONHSAT090671 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs1845767 | 0.83[EUR][1000 genomes] |
| rs1995024 | 0.80[AMR][1000 genomes] |
| rs6786180 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs72615739 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72615740 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs72615741 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs72615742 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs72615743 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs72615744 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs72615745 | 0.80[AMR][1000 genomes] |
| rs7643206 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv877115 | chr3:86278951-86554319 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv834753 | chr3:86386749-86546500 | Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
