Variant report

Variant	rs72615739
Chromosome Location	chr3:86434027-86434028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1495888	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1845767	0.92[EUR][1000 genomes]
rs6786180	0.92[EUR][1000 genomes]
rs72615740	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72615741	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72615742	0.92[EUR][1000 genomes]
rs72615743	0.92[EUR][1000 genomes]
rs72615744	0.89[EUR][1000 genomes]
rs72615745	0.88[EUR][1000 genomes]
rs7643206	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877115	chr3:86278951-86554319	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv834753	chr3:86386749-86546500	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3379906	chr3:86433362-86435260	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86430600-86434800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:86431000-86437400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:86431200-86434600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:86431200-86434800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:86431400-86437800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:86431600-86434400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:86431800-86435000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:86431800-86435200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:86431800-86435600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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