Variant report

Variant	rs6786180
Chromosome Location	chr3:86459128-86459129
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1495888	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1845767	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72615739	0.92[EUR][1000 genomes]
rs72615740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72615741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72615742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615744	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72615745	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7643206	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877115	chr3:86278951-86554319	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv834753	chr3:86386749-86546500	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86456600-86461200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:86457000-86461000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:86457200-86461200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:86457400-86460200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:86457400-86460600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:86457400-86460800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:86457400-86460800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:86457800-86460200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:86458200-86459600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:86458600-86460200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:86459000-86459400	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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