Variant report

Variant	rs1498829
Chromosome Location	chr4:54644786-54644787
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1013508	0.95[ASN][1000 genomes]
rs1013509	0.95[ASN][1000 genomes]
rs11133287	0.95[ASN][1000 genomes]
rs11721806	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11723162	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11731952	0.97[ASN][1000 genomes]
rs11734520	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12646885	0.95[ASN][1000 genomes]
rs1498815	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1498816	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1874915	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2102011	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2412491	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2412492	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2412496	0.95[ASN][1000 genomes]
rs2412498	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2412500	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4495107	0.92[ASN][1000 genomes]
rs4501282	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4561980	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4864821	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56061807	0.95[ASN][1000 genomes]
rs60681996	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62297730	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62297732	0.97[ASN][1000 genomes]
rs67780867	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6819547	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6819611	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6827313	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6827952	0.88[ASN][1000 genomes]
rs6834410	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6837405	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6837817	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6842213	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6842407	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6843127	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6845180	0.89[ASN][1000 genomes]
rs6845286	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6846594	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850939	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6854881	0.90[ASN][1000 genomes]
rs6858638	0.91[ASN][1000 genomes]
rs7686706	0.95[ASN][1000 genomes]
rs7688892	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879016	chr4:54638218-54710952	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54642800-54644800	Enhancers	NHLF	lung
2	chr4:54642800-54645400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:54643000-54645200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:54643200-54644800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:54643200-54645200	Enhancers	Osteobl	bone
6	chr4:54643400-54644800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:54643400-54644800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:54643400-54645200	Enhancers	Fetal Stomach	stomach
9	chr4:54643400-54645400	Enhancers	NHDF-Ad	bronchial
10	chr4:54643800-54647400	Weak transcription	Liver	Liver
11	chr4:54644000-54645400	Enhancers	A549	lung
12	chr4:54644000-54648000	Weak transcription	NH-A	brain
13	chr4:54644200-54647000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:54644200-54648000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:54644600-54646200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:54644600-54646800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr4:54644600-54647400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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