Variant report

Variant	rs12646885
Chromosome Location	chr4:54627559-54627560
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1013508	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1013509	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11133286	0.84[EUR][1000 genomes]
rs11133287	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11133288	0.84[EUR][1000 genomes]
rs11721806	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11723162	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11731952	0.92[ASN][1000 genomes]
rs11734520	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1498815	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1498816	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1498829	0.95[ASN][1000 genomes]
rs1874915	0.95[ASN][1000 genomes]
rs2102011	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2412491	0.96[ASN][1000 genomes]
rs2412492	0.95[ASN][1000 genomes]
rs2412496	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412498	0.86[ASN][1000 genomes]
rs2412500	0.95[ASN][1000 genomes]
rs2590764	0.83[EUR][1000 genomes]
rs2590765	0.83[EUR][1000 genomes]
rs2590766	0.85[EUR][1000 genomes]
rs2616432	0.81[EUR][1000 genomes]
rs4495107	0.89[ASN][1000 genomes]
rs4501282	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4561980	0.96[ASN][1000 genomes]
rs4864821	0.95[ASN][1000 genomes]
rs56061807	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60681996	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62297730	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62297732	0.92[ASN][1000 genomes]
rs67780867	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819547	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6819611	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6827313	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6827952	0.90[ASN][1000 genomes]
rs6834410	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6837405	0.96[ASN][1000 genomes]
rs6837817	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6842213	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6842407	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6843127	0.96[ASN][1000 genomes]
rs6845180	0.91[ASN][1000 genomes]
rs6845286	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6846594	0.95[ASN][1000 genomes]
rs6850939	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6854881	0.95[ASN][1000 genomes]
rs6858638	0.88[ASN][1000 genomes]
rs7686706	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688892	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv521350	chr4:54621715-54629262	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv527173	chr4:54626228-54629262	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv527672	chr4:54626228-54637201	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54626000-54629400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:54627200-54629400	Weak transcription	NHLF	lung

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