Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1013508	0.81[EUR][1000 genomes]
rs11133286	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11133287	0.81[EUR][1000 genomes]
rs11133288	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12645847	0.85[ASN][1000 genomes]
rs12646885	0.83[EUR][1000 genomes]
rs2412496	0.81[EUR][1000 genomes]
rs2590764	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590766	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590791	0.82[CHB][hapmap]
rs2616391	0.82[CHB][hapmap]
rs2616432	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3866377	0.81[ASN][1000 genomes]
rs55705508	0.86[ASN][1000 genomes]
rs67780867	0.86[EUR][1000 genomes]
rs6829218	0.86[ASN][1000 genomes]
rs715155	0.82[CHB][hapmap]
rs7685379	0.81[ASN][1000 genomes]
rs7686165	0.81[ASN][1000 genomes]
rs7686706	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2590765	PPAT	cis	cerebellum	SCAN
rs2590765	FTSJD1	trans	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54612000-54616000	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:54614600-54616000	ZNF genes & repeats	GM12878-XiMat	blood

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