Variant report

Variant	rs3866377
Chromosome Location	chr4:54612302-54612303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10014722	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2590764	0.81[ASN][1000 genomes]
rs2590765	0.81[ASN][1000 genomes]
rs2590766	0.81[ASN][1000 genomes]
rs2590791	0.87[CHB][hapmap]
rs2616391	0.87[CHB][hapmap]
rs2616432	0.81[ASN][1000 genomes]
rs3915415	0.83[EUR][1000 genomes]
rs3947804	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs715155	0.87[CHB][hapmap]
rs7685379	0.99[ASN][1000 genomes]
rs7686165	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54611600-54612800	Weak transcription	GM12878-XiMat	blood
2	chr4:54612000-54612400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:54612000-54616000	Enhancers	Primary B cells from peripheral blood	blood
4	chr4:54612200-54612400	Enhancers	Fetal Brain Male	brain
5	chr4:54612200-54612600	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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