Variant report

Variant	rs2590791
Chromosome Location	chr4:54570277-54570278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54568125..54570977-chr4:54571339..54573651,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1551880	0.88[EUR][1000 genomes]
rs2590785	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2590787	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2590789	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2590792	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2616391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2616393	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2668537	0.83[GIH][hapmap]
rs2668538	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs715155	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54568600-54570400	Enhancers	Fetal Stomach	stomach
2	chr4:54569200-54573200	Enhancers	Primary B cells from peripheral blood	blood
3	chr4:54569400-54570400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:54569400-54570400	Enhancers	Fetal Muscle Leg	muscle
5	chr4:54569400-54570600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr4:54569400-54571400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:54569400-54572400	Weak transcription	Psoas Muscle	Psoas
8	chr4:54569400-54572800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:54569400-54573200	Enhancers	Primary B cells from cord blood	blood
10	chr4:54569400-54577200	Weak transcription	Aorta	Aorta
11	chr4:54569600-54570400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:54569600-54570400	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr4:54569600-54570600	Enhancers	Fetal Kidney	kidney
14	chr4:54569600-54570800	Enhancers	GM12878-XiMat	blood
15	chr4:54569600-54570800	Enhancers	NHDF-Ad	bronchial
16	chr4:54569600-54572000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr4:54569600-54572800	Weak transcription	Gastric	stomach
18	chr4:54569600-54572800	Weak transcription	Pancreas	Pancrea
19	chr4:54569600-54573200	Weak transcription	Colonic Mucosa	Colon
20	chr4:54569600-54580200	Weak transcription	HSMM	muscle
21	chr4:54569600-54583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr4:54569800-54570400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:54569800-54570400	Enhancers	Adipose Nuclei	Adipose
24	chr4:54569800-54570400	Bivalent Enhancer	Fetal Lung	lung
25	chr4:54569800-54570800	Weak transcription	Lung	lung
26	chr4:54569800-54571000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:54569800-54571200	Weak transcription	Small Intestine	intestine
28	chr4:54569800-54571400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:54569800-54571600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr4:54569800-54572000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr4:54569800-54572800	Weak transcription	Ovary	ovary
32	chr4:54569800-54572800	Weak transcription	Spleen	Spleen
33	chr4:54569800-54577800	Weak transcription	Right Atrium	heart
34	chr4:54569800-54578600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr4:54570000-54571200	Weak transcription	A549	lung
36	chr4:54570000-54571200	Weak transcription	NH-A	brain
37	chr4:54570000-54571400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr4:54570000-54571400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr4:54570000-54571400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr4:54570000-54572200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:54570000-54572400	Weak transcription	Liver	Liver
42	chr4:54570200-54570600	Weak transcription	Brain Hippocampus Middle	brain
43	chr4:54570200-54571200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr4:54570200-54571200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr4:54570200-54571200	Weak transcription	HUVEC	blood vessel
46	chr4:54570200-54571400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:54570200-54571400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr4:54570200-54571400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr4:54570200-54571400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr4:54570200-54571400	Weak transcription	NHLF	lung

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