Variant report

Variant	rs1551880
Chromosome Location	chr4:54578712-54578713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1871028	0.98[ASN][1000 genomes]
rs1993838	0.96[ASN][1000 genomes]
rs2590775	0.85[ASN][1000 genomes]
rs2590785	0.88[EUR][1000 genomes]
rs2590786	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590787	0.88[EUR][1000 genomes]
rs2590789	0.88[EUR][1000 genomes]
rs2590791	0.80[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs2590792	0.85[EUR][1000 genomes]
rs2590827	0.93[ASN][1000 genomes]
rs2590829	0.90[ASN][1000 genomes]
rs2616390	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2616391	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs2616393	0.88[EUR][1000 genomes]
rs2616398	0.96[ASN][1000 genomes]
rs2616405	0.93[ASN][1000 genomes]
rs2616411	0.85[ASN][1000 genomes]
rs2616412	0.85[ASN][1000 genomes]
rs2668537	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2668538	0.88[EUR][1000 genomes]
rs2668539	0.98[ASN][1000 genomes]
rs2668540	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs715155	0.80[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54569600-54580200	Weak transcription	HSMM	muscle
2	chr4:54569600-54583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:54573200-54580200	Weak transcription	NHLF	lung
4	chr4:54573200-54581400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:54577400-54581200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:54577400-54581400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:54577600-54579000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr4:54577600-54579200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:54577600-54579200	Enhancers	Ovary	ovary
10	chr4:54577600-54584000	Enhancers	Osteobl	bone
11	chr4:54577800-54578800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr4:54577800-54578800	Enhancers	Fetal Muscle Trunk	muscle
13	chr4:54577800-54578800	Enhancers	Pancreas	Pancrea
14	chr4:54577800-54578800	Enhancers	Right Atrium	heart
15	chr4:54577800-54579800	Enhancers	Fetal Muscle Leg	muscle
16	chr4:54577800-54581400	Enhancers	NHDF-Ad	bronchial
17	chr4:54577800-54583600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:54578000-54578800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:54578000-54578800	Enhancers	Placenta	Placenta
20	chr4:54578200-54579000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:54578400-54579000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:54578400-54579400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr4:54578400-54582800	Weak transcription	Fetal Stomach	stomach
24	chr4:54578600-54578800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr4:54578600-54578800	Enhancers	Adipose Nuclei	Adipose
26	chr4:54578600-54578800	Enhancers	Aorta	Aorta
27	chr4:54578600-54579200	Enhancers	NH-A	brain

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