Variant report

Variant	rs2590786
Chromosome Location	chr4:54574365-54574366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54570474..54572484-chr4:54573853..54575756,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1551880	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1871028	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1993838	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2590775	0.87[ASN][1000 genomes]
rs2590791	0.81[GIH][hapmap];0.81[TSI][hapmap]
rs2590827	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2590829	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2616390	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2616398	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2616405	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2616411	0.87[ASN][1000 genomes]
rs2616412	0.87[ASN][1000 genomes]
rs2668537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2668539	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2668540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs715155	0.83[GIH][hapmap];0.81[TSI][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54569400-54577200	Weak transcription	Aorta	Aorta
2	chr4:54569600-54580200	Weak transcription	HSMM	muscle
3	chr4:54569600-54583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:54569800-54577800	Weak transcription	Right Atrium	heart
5	chr4:54569800-54578600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:54570200-54577800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:54571400-54576000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:54572200-54577200	Weak transcription	Lung	lung
9	chr4:54572600-54577400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:54572800-54578600	Weak transcription	Adipose Nuclei	Adipose
11	chr4:54573000-54577600	Weak transcription	Osteobl	bone
12	chr4:54573000-54577800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:54573200-54577600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:54573200-54577600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:54573200-54577600	Weak transcription	Ovary	ovary
16	chr4:54573200-54577800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:54573200-54577800	Weak transcription	Pancreas	Pancrea
18	chr4:54573200-54577800	Weak transcription	Spleen	Spleen
19	chr4:54573200-54577800	Weak transcription	NHDF-Ad	bronchial
20	chr4:54573200-54580200	Weak transcription	NHLF	lung
21	chr4:54573200-54581400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:54573800-54578000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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