Variant report

Variant	rs2668537
Chromosome Location	chr4:54569983-54569984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54568125..54570977-chr4:54571339..54573651,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1551880	0.96[ASN][1000 genomes]
rs1871028	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1993838	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2590775	0.85[ASN][1000 genomes]
rs2590786	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2590791	0.83[GIH][hapmap]
rs2590827	0.93[ASN][1000 genomes]
rs2590829	0.90[ASN][1000 genomes]
rs2616390	0.82[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2616398	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2616405	0.93[ASN][1000 genomes]
rs2616411	0.85[ASN][1000 genomes]
rs2616412	0.85[ASN][1000 genomes]
rs2668539	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2668540	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs715155	0.85[GIH][hapmap]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54568600-54570000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:54568600-54570200	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr4:54568600-54570400	Enhancers	Fetal Stomach	stomach
4	chr4:54568800-54570200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:54569200-54570000	Enhancers	Primary hematopoietic stem cells	blood
6	chr4:54569200-54573200	Enhancers	Primary B cells from peripheral blood	blood
7	chr4:54569400-54570000	Enhancers	A549	lung
8	chr4:54569400-54570200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:54569400-54570200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:54569400-54570200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:54569400-54570200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:54569400-54570200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr4:54569400-54570400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:54569400-54570400	Enhancers	Fetal Muscle Leg	muscle
15	chr4:54569400-54570600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr4:54569400-54571400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:54569400-54572400	Weak transcription	Psoas Muscle	Psoas
18	chr4:54569400-54572800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:54569400-54573200	Enhancers	Primary B cells from cord blood	blood
20	chr4:54569400-54577200	Weak transcription	Aorta	Aorta
21	chr4:54569600-54570000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:54569600-54570000	Enhancers	Liver	Liver
23	chr4:54569600-54570000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr4:54569600-54570000	Enhancers	NH-A	brain
25	chr4:54569600-54570200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:54569600-54570200	Enhancers	Brain Anterior Caudate	brain
27	chr4:54569600-54570200	Enhancers	Duodenum Mucosa	Duodenum
28	chr4:54569600-54570200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr4:54569600-54570200	Enhancers	HepG2	liver
30	chr4:54569600-54570200	Enhancers	NHLF	lung
31	chr4:54569600-54570400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:54569600-54570400	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr4:54569600-54570600	Enhancers	Fetal Kidney	kidney
34	chr4:54569600-54570800	Enhancers	GM12878-XiMat	blood
35	chr4:54569600-54570800	Enhancers	NHDF-Ad	bronchial
36	chr4:54569600-54572000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr4:54569600-54572800	Weak transcription	Gastric	stomach
38	chr4:54569600-54572800	Weak transcription	Pancreas	Pancrea
39	chr4:54569600-54573200	Weak transcription	Colonic Mucosa	Colon
40	chr4:54569600-54580200	Weak transcription	HSMM	muscle
41	chr4:54569600-54583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr4:54569800-54570000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:54569800-54570200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:54569800-54570200	Enhancers	Brain Hippocampus Middle	brain
45	chr4:54569800-54570200	Enhancers	Fetal Heart	heart
46	chr4:54569800-54570200	Enhancers	Hela-S3	cervix
47	chr4:54569800-54570200	Enhancers	HUVEC	blood vessel
48	chr4:54569800-54570200	Enhancers	Osteobl	bone
49	chr4:54569800-54570400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr4:54569800-54570400	Enhancers	Adipose Nuclei	Adipose

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